Strain Fitness in Variovorax sp. SCN45 around GFF5065

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5063 and GFF5064 are separated by 39 nucleotidesGFF5064 and GFF5065 are separated by 12 nucleotidesGFF5065 and GFF5066 are separated by 12 nucleotidesGFF5066 and GFF5067 are separated by 24 nucleotides GFF5063 - Aspartyl-tRNA(Asn) amidotransferase subunit B (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit B (EC 6.3.5.7), at 165,173 to 166,663 GFF5063 GFF5064 - Exonuclease SbcC, at 166,703 to 167,392 GFF5064 GFF5065 - Orotate phosphoribosyltransferase (EC 2.4.2.10), at 167,405 to 168,088 GFF5065 GFF5066 - Exodeoxyribonuclease III (EC 3.1.11.2), at 168,101 to 168,904 GFF5066 GFF5067 - Transcriptional regulator, LysR family, at 168,929 to 169,837 GFF5067 Position (kb) 167 168 169Strain fitness (log2 ratio) -1 0 1 2at 166.896 kb on + strand, within GFF5064at 166.896 kb on + strand, within GFF5064at 166.896 kb on + strand, within GFF5064at 166.896 kb on + strand, within GFF5064at 166.896 kb on + strand, within GFF5064at 166.896 kb on + strand, within GFF5064at 166.896 kb on + strand, within GFF5064at 166.896 kb on + strand, within GFF5064at 166.896 kb on + strand, within GFF5064at 166.896 kb on + strand, within GFF5064at 166.896 kb on + strand, within GFF5064at 166.896 kb on + strand, within GFF5064at 166.897 kb on - strand, within GFF5064at 166.897 kb on - strand, within GFF5064at 166.897 kb on - strand, within GFF5064at 166.897 kb on - strand, within GFF5064at 166.897 kb on - strand, within GFF5064at 166.897 kb on - strand, within GFF5064at 166.897 kb on - strand, within GFF5064at 166.897 kb on - strand, within GFF5064at 166.897 kb on - strand, within GFF5064at 166.897 kb on - strand, within GFF5064at 166.897 kb on - strand, within GFF5064at 167.139 kb on + strand, within GFF5064at 167.139 kb on + strand, within GFF5064at 167.139 kb on + strand, within GFF5064at 167.139 kb on + strand, within GFF5064at 167.140 kb on - strand, within GFF5064at 167.140 kb on - strand, within GFF5064at 167.336 kb on + strandat 167.336 kb on + strandat 167.337 kb on - strandat 167.399 kb on + strandat 167.399 kb on + strandat 167.399 kb on + strandat 167.399 kb on + strandat 167.400 kb on - strandat 167.400 kb on - strandat 167.400 kb on - strandat 167.400 kb on - strandat 167.430 kb on + strandat 167.487 kb on + strand, within GFF5065at 167.487 kb on + strand, within GFF5065at 167.550 kb on + strand, within GFF5065at 167.550 kb on + strand, within GFF5065at 167.551 kb on - strand, within GFF5065at 167.794 kb on - strand, within GFF5065at 167.910 kb on + strand, within GFF5065at 167.970 kb on + strand, within GFF5065at 168.080 kb on + strandat 168.080 kb on + strandat 168.080 kb on + strandat 168.080 kb on + strandat 168.080 kb on + strandat 168.080 kb on + strandat 168.080 kb on + strandat 168.080 kb on + strandat 168.080 kb on + strandat 168.080 kb on + strandat 168.080 kb on + strandat 168.080 kb on + strandat 168.080 kb on + strandat 168.080 kb on + strandat 168.080 kb on + strandat 168.080 kb on + strandat 168.080 kb on + strandat 168.081 kb on - strandat 168.081 kb on - strandat 168.081 kb on - strandat 168.081 kb on - strandat 168.081 kb on - strandat 168.081 kb on - strandat 168.081 kb on - strandat 168.081 kb on - strandat 168.081 kb on - strandat 168.081 kb on - strandat 168.081 kb on - strandat 168.081 kb on - strandat 168.148 kb on + strandat 168.149 kb on - strandat 168.193 kb on + strand, within GFF5066at 168.193 kb on + strand, within GFF5066at 168.193 kb on + strand, within GFF5066at 168.193 kb on + strand, within GFF5066at 168.193 kb on + strand, within GFF5066at 168.193 kb on + strand, within GFF5066at 168.193 kb on + strand, within GFF5066at 168.194 kb on - strand, within GFF5066at 168.194 kb on - strand, within GFF5066at 168.194 kb on - strand, within GFF5066at 168.194 kb on - strand, within GFF5066at 168.194 kb on - strand, within GFF5066at 168.194 kb on - strand, within GFF5066at 168.194 kb on - strand, within GFF5066at 168.194 kb on - strand, within GFF5066at 168.296 kb on + strand, within GFF5066at 168.297 kb on - strand, within GFF5066at 168.297 kb on - strand, within GFF5066at 168.297 kb on - strand, within GFF5066at 168.297 kb on - strand, within GFF5066at 168.314 kb on + strand, within GFF5066at 168.314 kb on + strand, within GFF5066at 168.314 kb on + strand, within GFF5066at 168.314 kb on + strand, within GFF5066at 168.315 kb on - strand, within GFF5066at 168.315 kb on - strand, within GFF5066at 168.383 kb on + strand, within GFF5066at 168.437 kb on + strand, within GFF5066at 168.437 kb on + strand, within GFF5066at 168.437 kb on + strand, within GFF5066at 168.438 kb on - strand, within GFF5066at 168.695 kb on + strand, within GFF5066at 168.695 kb on + strand, within GFF5066at 168.696 kb on - strand, within GFF5066at 168.731 kb on + strand, within GFF5066at 168.731 kb on + strand, within GFF5066at 168.731 kb on + strand, within GFF5066at 168.731 kb on + strand, within GFF5066at 168.731 kb on + strand, within GFF5066at 168.731 kb on + strand, within GFF5066at 168.732 kb on - strand, within GFF5066at 168.732 kb on - strand, within GFF5066at 168.732 kb on - strand, within GFF5066at 168.732 kb on - strand, within GFF5066at 168.732 kb on - strand, within GFF5066at 168.732 kb on - strand, within GFF5066at 168.732 kb on - strand, within GFF5066at 168.732 kb on - strand, within GFF5066at 168.732 kb on - strand, within GFF5066at 168.732 kb on - strand, within GFF5066at 168.732 kb on - strand, within GFF5066at 168.732 kb on - strand, within GFF5066at 168.732 kb on - strand, within GFF5066at 168.732 kb on - strand, within GFF5066at 168.762 kb on - strand, within GFF5066at 168.762 kb on - strand, within GFF5066at 168.762 kb on - strand, within GFF5066at 168.791 kb on + strand, within GFF5066at 168.791 kb on + strand, within GFF5066at 168.791 kb on + strand, within GFF5066at 168.791 kb on + strand, within GFF5066at 168.791 kb on + strand, within GFF5066at 168.791 kb on + strand, within GFF5066at 168.792 kb on - strand, within GFF5066at 168.792 kb on - strand, within GFF5066at 168.792 kb on - strand, within GFF5066at 168.842 kb on + strandat 168.842 kb on + strandat 168.842 kb on + strandat 168.843 kb on - strandat 168.887 kb on + strandat 168.888 kb on - strandat 168.888 kb on - strandat 168.902 kb on + strandat 168.902 kb on + strandat 168.902 kb on + strandat 168.902 kb on + strandat 168.902 kb on + strandat 168.902 kb on + strandat 168.902 kb on + strandat 168.902 kb on + strandat 168.903 kb on - strandat 168.903 kb on - strandat 168.903 kb on - strandat 168.903 kb on - strandat 168.903 kb on - strandat 168.903 kb on - strandat 168.903 kb on - strandat 168.908 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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166,896 + GFF5064 0.28 +1.0
166,896 + GFF5064 0.28 -0.3
166,896 + GFF5064 0.28 +0.3
166,896 + GFF5064 0.28 +0.7
166,896 + GFF5064 0.28 -0.3
166,896 + GFF5064 0.28 +0.2
166,896 + GFF5064 0.28 +1.5
166,896 + GFF5064 0.28 -0.3
166,896 + GFF5064 0.28 +1.1
166,896 + GFF5064 0.28 -0.3
166,896 + GFF5064 0.28 -1.0
166,896 + GFF5064 0.28 -0.7
166,897 - GFF5064 0.28 +0.8
166,897 - GFF5064 0.28 +0.3
166,897 - GFF5064 0.28 +0.3
166,897 - GFF5064 0.28 +0.0
166,897 - GFF5064 0.28 -1.4
166,897 - GFF5064 0.28 +0.4
166,897 - GFF5064 0.28 +1.2
166,897 - GFF5064 0.28 +0.0
166,897 - GFF5064 0.28 +0.2
166,897 - GFF5064 0.28 +0.4
166,897 - GFF5064 0.28 +0.4
167,139 + GFF5064 0.63 -0.6
167,139 + GFF5064 0.63 -0.2
167,139 + GFF5064 0.63 +0.0
167,139 + GFF5064 0.63 +1.8
167,140 - GFF5064 0.63 +1.2
167,140 - GFF5064 0.63 +1.8
167,336 + -0.0
167,336 + +0.1
167,337 - +0.4
167,399 + +1.8
167,399 + +0.4
167,399 + -0.3
167,399 + -0.2
167,400 - +0.8
167,400 - -0.1
167,400 - -1.0
167,400 - -0.3
167,430 + -1.6
167,487 + GFF5065 0.12 -0.8
167,487 + GFF5065 0.12 -1.0
167,550 + GFF5065 0.21 -0.2
167,550 + GFF5065 0.21 -0.8
167,551 - GFF5065 0.21 +0.8
167,794 - GFF5065 0.57 -0.5
167,910 + GFF5065 0.74 -0.2
167,970 + GFF5065 0.83 -1.4
168,080 + +1.6
168,080 + +0.8
168,080 + +0.7
168,080 + -0.3
168,080 + -0.8
168,080 + -0.5
168,080 + -1.1
168,080 + +0.4
168,080 + -0.4
168,080 + -0.1
168,080 + -0.3
168,080 + -0.0
168,080 + +0.1
168,080 + +0.5
168,080 + +0.5
168,080 + -0.1
168,080 + -0.0
168,081 - +0.2
168,081 - +1.8
168,081 - -1.3
168,081 - +0.1
168,081 - +0.2
168,081 - +0.6
168,081 - -0.8
168,081 - +0.5
168,081 - -0.8
168,081 - +1.5
168,081 - +0.8
168,081 - -0.5
168,148 + -0.4
168,149 - +0.3
168,193 + GFF5066 0.11 +0.2
168,193 + GFF5066 0.11 -0.0
168,193 + GFF5066 0.11 +0.2
168,193 + GFF5066 0.11 -0.6
168,193 + GFF5066 0.11 -0.5
168,193 + GFF5066 0.11 +0.1
168,193 + GFF5066 0.11 +0.4
168,194 - GFF5066 0.12 +1.6
168,194 - GFF5066 0.12 +0.7
168,194 - GFF5066 0.12 +0.1
168,194 - GFF5066 0.12 -0.1
168,194 - GFF5066 0.12 +0.3
168,194 - GFF5066 0.12 -0.1
168,194 - GFF5066 0.12 +0.3
168,194 - GFF5066 0.12 -1.7
168,296 + GFF5066 0.24 +1.1
168,297 - GFF5066 0.24 -0.3
168,297 - GFF5066 0.24 +0.1
168,297 - GFF5066 0.24 -0.5
168,297 - GFF5066 0.24 -0.3
168,314 + GFF5066 0.26 -0.2
168,314 + GFF5066 0.26 -0.8
168,314 + GFF5066 0.26 +1.4
168,314 + GFF5066 0.26 -0.2
168,315 - GFF5066 0.27 -0.3
168,315 - GFF5066 0.27 +0.6
168,383 + GFF5066 0.35 -0.5
168,437 + GFF5066 0.42 -0.2
168,437 + GFF5066 0.42 +0.2
168,437 + GFF5066 0.42 -0.5
168,438 - GFF5066 0.42 +0.2
168,695 + GFF5066 0.74 -0.2
168,695 + GFF5066 0.74 +1.8
168,696 - GFF5066 0.74 +1.8
168,731 + GFF5066 0.78 +0.3
168,731 + GFF5066 0.78 -1.1
168,731 + GFF5066 0.78 +0.5
168,731 + GFF5066 0.78 -0.1
168,731 + GFF5066 0.78 +1.2
168,731 + GFF5066 0.78 +0.2
168,732 - GFF5066 0.78 -0.1
168,732 - GFF5066 0.78 +0.7
168,732 - GFF5066 0.78 +0.3
168,732 - GFF5066 0.78 -0.9
168,732 - GFF5066 0.78 -0.2
168,732 - GFF5066 0.78 +0.1
168,732 - GFF5066 0.78 +2.4
168,732 - GFF5066 0.78 -0.2
168,732 - GFF5066 0.78 -0.9
168,732 - GFF5066 0.78 -0.4
168,732 - GFF5066 0.78 +0.7
168,732 - GFF5066 0.78 +0.8
168,732 - GFF5066 0.78 -0.3
168,732 - GFF5066 0.78 +1.0
168,762 - GFF5066 0.82 -0.6
168,762 - GFF5066 0.82 +0.0
168,762 - GFF5066 0.82 +1.1
168,791 + GFF5066 0.86 -0.6
168,791 + GFF5066 0.86 +1.8
168,791 + GFF5066 0.86 -0.6
168,791 + GFF5066 0.86 -0.1
168,791 + GFF5066 0.86 -0.5
168,791 + GFF5066 0.86 +0.6
168,792 - GFF5066 0.86 +0.5
168,792 - GFF5066 0.86 +0.5
168,792 - GFF5066 0.86 -0.2
168,842 + +1.6
168,842 + -0.1
168,842 + +0.1
168,843 - +0.4
168,887 + -0.6
168,888 - -0.7
168,888 - -0.1
168,902 + -0.1
168,902 + +1.2
168,902 + -0.7
168,902 + +0.2
168,902 + -0.3
168,902 + -0.3
168,902 + +0.4
168,902 + -0.5
168,903 - -0.0
168,903 - -1.2
168,903 - +0.2
168,903 - -0.6
168,903 - +0.2
168,903 - +1.0
168,903 - -0.7
168,908 + +0.5

Or see this region's nucleotide sequence