Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4857 and GFF4858 are separated by 267 nucleotides GFF4858 and GFF4859 are separated by 188 nucleotides GFF4859 and GFF4860 are separated by 347 nucleotides
GFF4857 - benzoate MFS transporter BenK, at 227,236 to 228,603
GFF4857
GFF4858 - Transposase, at 228,871 to 229,149
GFF4858
GFF4859 - MBL-fold metallo-hydrolase superfamily, at 229,338 to 230,387
GFF4859
GFF4860 - Transcriptional regulator, AraC family, at 230,735 to 231,763
GFF4860
Position (kb) 229
230
231 Strain fitness (log2 ratio) -2
-1
0
1
2 at 228.500 kb on + strand at 228.501 kb on - strand at 228.501 kb on - strand at 228.624 kb on - strand at 228.663 kb on + strand at 228.663 kb on + strand at 228.663 kb on + strand at 228.663 kb on + strand at 228.663 kb on + strand at 228.664 kb on - strand at 228.664 kb on - strand at 228.664 kb on - strand at 228.664 kb on - strand at 228.664 kb on - strand at 228.693 kb on + strand at 228.693 kb on + strand at 228.693 kb on + strand at 228.694 kb on - strand at 228.694 kb on - strand at 228.803 kb on + strand at 228.803 kb on + strand at 228.803 kb on + strand at 228.804 kb on - strand at 228.804 kb on - strand at 228.804 kb on - strand at 228.825 kb on + strand at 228.825 kb on + strand at 228.826 kb on - strand at 228.826 kb on - strand at 228.826 kb on - strand at 228.931 kb on + strand, within GFF4858 at 228.931 kb on + strand, within GFF4858 at 228.931 kb on + strand, within GFF4858 at 228.931 kb on + strand, within GFF4858 at 228.932 kb on - strand, within GFF4858 at 228.932 kb on - strand, within GFF4858 at 228.932 kb on - strand, within GFF4858 at 229.116 kb on + strand, within GFF4858 at 229.116 kb on + strand, within GFF4858 at 229.116 kb on + strand, within GFF4858 at 229.116 kb on + strand, within GFF4858 at 229.116 kb on + strand, within GFF4858 at 229.117 kb on - strand, within GFF4858 at 229.117 kb on - strand, within GFF4858 at 229.117 kb on - strand, within GFF4858 at 229.124 kb on + strand at 229.225 kb on + strand at 229.225 kb on + strand at 229.306 kb on + strand at 229.306 kb on + strand at 229.306 kb on + strand at 229.306 kb on + strand at 229.306 kb on + strand at 229.306 kb on + strand at 229.307 kb on - strand at 229.307 kb on - strand at 229.307 kb on - strand at 229.310 kb on + strand at 229.312 kb on + strand at 229.312 kb on + strand at 229.312 kb on + strand at 229.312 kb on + strand at 229.312 kb on + strand at 229.312 kb on + strand at 229.312 kb on + strand at 229.312 kb on + strand at 229.312 kb on + strand at 229.312 kb on + strand at 229.312 kb on + strand at 229.313 kb on - strand at 229.313 kb on - strand at 229.313 kb on - strand at 229.313 kb on - strand at 229.313 kb on - strand at 229.313 kb on - strand at 229.313 kb on - strand at 229.313 kb on - strand at 229.313 kb on - strand at 229.314 kb on + strand at 229.314 kb on + strand at 229.315 kb on - strand at 229.332 kb on - strand at 229.332 kb on - strand at 229.332 kb on - strand at 229.332 kb on - strand at 229.408 kb on + strand at 229.408 kb on + strand at 229.409 kb on - strand at 229.413 kb on + strand at 229.413 kb on + strand at 229.413 kb on + strand at 229.413 kb on + strand at 229.413 kb on + strand at 229.413 kb on + strand at 229.413 kb on + strand at 229.413 kb on + strand at 229.413 kb on + strand at 229.480 kb on + strand, within GFF4859 at 229.480 kb on + strand, within GFF4859 at 229.480 kb on + strand, within GFF4859 at 229.480 kb on + strand, within GFF4859 at 229.480 kb on + strand, within GFF4859 at 229.481 kb on - strand, within GFF4859 at 229.581 kb on + strand, within GFF4859 at 229.581 kb on + strand, within GFF4859 at 229.581 kb on + strand, within GFF4859 at 229.581 kb on + strand, within GFF4859 at 229.581 kb on + strand, within GFF4859 at 229.582 kb on - strand, within GFF4859 at 229.582 kb on - strand, within GFF4859 at 229.582 kb on - strand, within GFF4859 at 229.582 kb on - strand, within GFF4859 at 229.582 kb on - strand, within GFF4859 at 229.638 kb on + strand, within GFF4859 at 229.639 kb on - strand, within GFF4859 at 229.708 kb on + strand, within GFF4859 at 229.708 kb on + strand, within GFF4859 at 229.709 kb on - strand, within GFF4859 at 229.709 kb on - strand, within GFF4859 at 229.709 kb on - strand, within GFF4859 at 229.709 kb on - strand, within GFF4859 at 229.709 kb on - strand, within GFF4859 at 229.718 kb on + strand, within GFF4859 at 229.718 kb on + strand, within GFF4859 at 229.719 kb on - strand, within GFF4859 at 229.719 kb on - strand, within GFF4859 at 229.719 kb on - strand, within GFF4859 at 229.756 kb on - strand, within GFF4859 at 229.780 kb on + strand, within GFF4859 at 229.781 kb on - strand, within GFF4859 at 229.781 kb on - strand, within GFF4859 at 229.781 kb on - strand, within GFF4859 at 229.930 kb on + strand, within GFF4859 at 229.930 kb on + strand, within GFF4859 at 229.969 kb on + strand, within GFF4859 at 229.970 kb on - strand, within GFF4859 at 230.035 kb on + strand, within GFF4859 at 230.035 kb on + strand, within GFF4859 at 230.035 kb on + strand, within GFF4859 at 230.035 kb on + strand, within GFF4859 at 230.035 kb on + strand, within GFF4859 at 230.124 kb on + strand, within GFF4859 at 230.124 kb on + strand, within GFF4859 at 230.125 kb on - strand, within GFF4859 at 230.125 kb on - strand, within GFF4859 at 230.125 kb on - strand, within GFF4859 at 230.399 kb on + strand at 230.400 kb on - strand at 230.400 kb on - strand at 230.400 kb on - strand at 230.400 kb on - strand at 230.400 kb on - strand at 230.400 kb on - strand at 230.421 kb on + strand at 230.421 kb on + strand at 230.421 kb on + strand at 230.421 kb on + strand at 230.422 kb on - strand at 230.422 kb on - strand at 230.422 kb on - strand at 230.422 kb on - strand at 230.422 kb on - strand at 230.444 kb on + strand at 230.445 kb on - strand at 230.445 kb on - strand at 230.445 kb on - strand at 230.445 kb on - strand at 230.445 kb on - strand at 230.445 kb on - strand at 230.445 kb on - strand at 230.445 kb on - strand at 230.465 kb on + strand at 230.466 kb on - strand at 230.470 kb on + strand at 230.470 kb on + strand at 230.471 kb on - strand at 230.471 kb on - strand at 230.471 kb on - strand at 230.471 kb on - strand at 230.471 kb on - strand at 230.479 kb on + strand at 230.479 kb on + strand at 230.479 kb on + strand at 230.480 kb on - strand at 230.480 kb on - strand at 230.480 kb on - strand at 230.480 kb on - strand at 230.520 kb on + strand at 230.634 kb on + strand at 230.635 kb on - strand at 230.635 kb on - strand at 230.635 kb on - strand at 230.654 kb on + strand at 230.654 kb on + strand at 230.654 kb on + strand at 230.654 kb on + strand at 230.654 kb on + strand at 230.654 kb on + strand at 230.654 kb on + strand at 230.654 kb on + strand at 230.654 kb on + strand at 230.655 kb on - strand at 230.655 kb on - strand at 230.655 kb on - strand at 230.655 kb on - strand at 230.655 kb on - strand at 230.685 kb on + strand at 230.685 kb on + strand at 230.724 kb on + strand at 230.724 kb on + strand at 230.724 kb on + strand at 230.724 kb on + strand at 230.724 kb on + strand at 230.724 kb on + strand at 230.724 kb on + strand at 230.724 kb on + strand at 230.724 kb on + strand at 230.724 kb on + strand at 230.724 kb on + strand at 230.724 kb on + strand at 230.724 kb on + strand at 230.724 kb on + strand at 230.724 kb on + strand at 230.724 kb on + strand at 230.724 kb on + strand at 230.724 kb on + strand at 230.724 kb on + strand at 230.724 kb on + strand at 230.724 kb on + strand at 230.724 kb on + strand at 230.725 kb on - strand at 230.725 kb on - strand at 230.725 kb on - strand at 230.725 kb on - strand at 230.725 kb on - strand at 230.725 kb on - strand at 230.725 kb on - strand at 230.725 kb on - strand at 230.725 kb on - strand at 230.725 kb on - strand at 230.725 kb on - strand at 230.725 kb on - strand at 230.725 kb on - strand at 230.725 kb on - strand at 230.725 kb on - strand at 230.725 kb on - strand at 230.725 kb on - strand at 230.725 kb on - strand at 230.725 kb on - strand at 230.725 kb on - strand at 230.725 kb on - strand at 230.725 kb on - strand at 230.728 kb on + strand at 230.728 kb on + strand at 230.728 kb on + strand at 230.728 kb on + strand at 230.728 kb on + strand at 230.728 kb on + strand at 230.728 kb on + strand at 230.728 kb on + strand at 230.728 kb on + strand at 230.728 kb on + strand at 230.728 kb on + strand at 230.729 kb on - strand at 230.729 kb on - strand at 230.729 kb on - strand at 230.729 kb on - strand at 230.729 kb on - strand at 230.729 kb on - strand at 230.729 kb on - strand at 230.729 kb on - strand at 230.729 kb on - strand at 230.729 kb on - strand at 230.729 kb on - strand at 230.729 kb on - strand at 230.729 kb on - strand at 230.736 kb on + strand at 230.736 kb on + strand at 230.736 kb on + strand at 230.736 kb on + strand at 230.736 kb on + strand at 230.736 kb on + strand at 230.736 kb on + strand at 230.737 kb on - strand at 230.737 kb on - strand at 230.737 kb on - strand at 230.737 kb on - strand at 230.737 kb on - strand at 230.737 kb on - strand at 230.737 kb on - strand at 230.760 kb on + strand at 230.760 kb on + strand at 230.761 kb on - strand at 230.761 kb on - strand at 230.909 kb on + strand, within GFF4860 at 231.066 kb on + strand, within GFF4860 at 231.066 kb on + strand, within GFF4860 at 231.066 kb on + strand, within GFF4860 at 231.067 kb on - strand, within GFF4860 at 231.067 kb on - strand, within GFF4860 at 231.143 kb on - strand, within GFF4860 at 231.143 kb on - strand, within GFF4860 at 231.216 kb on + strand, within GFF4860 at 231.216 kb on + strand, within GFF4860 at 231.217 kb on - strand, within GFF4860 at 231.217 kb on - strand, within GFF4860 at 231.217 kb on - strand, within GFF4860 at 231.217 kb on - strand, within GFF4860 at 231.217 kb on - strand, within GFF4860 at 231.217 kb on - strand, within GFF4860
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 228,500 + -1.0 228,501 - -0.1 228,501 - -0.4 228,624 - -0.2 228,663 + -0.8 228,663 + +0.6 228,663 + -0.2 228,663 + -0.6 228,663 + -1.0 228,664 - -0.3 228,664 - +0.2 228,664 - -0.1 228,664 - -0.2 228,664 - -0.1 228,693 + -1.2 228,693 + -0.1 228,693 + +0.1 228,694 - +0.6 228,694 - +1.6 228,803 + -0.9 228,803 + -0.8 228,803 + -0.3 228,804 - -0.4 228,804 - +0.6 228,804 - -0.6 228,825 + -0.2 228,825 + +0.4 228,826 - -0.2 228,826 - +0.2 228,826 - -0.7 228,931 + GFF4858 0.22 -0.2 228,931 + GFF4858 0.22 -0.6 228,931 + GFF4858 0.22 -0.6 228,931 + GFF4858 0.22 +0.5 228,932 - GFF4858 0.22 +1.6 228,932 - GFF4858 0.22 -0.2 228,932 - GFF4858 0.22 -1.0 229,116 + GFF4858 0.88 +0.2 229,116 + GFF4858 0.88 -0.3 229,116 + GFF4858 0.88 -0.3 229,116 + GFF4858 0.88 -0.1 229,116 + GFF4858 0.88 +0.1 229,117 - GFF4858 0.88 -1.2 229,117 - GFF4858 0.88 -0.4 229,117 - GFF4858 0.88 +0.9 229,124 + +0.1 229,225 + +2.2 229,225 + -0.3 229,306 + -0.9 229,306 + +0.6 229,306 + +0.0 229,306 + -0.4 229,306 + +0.6 229,306 + -0.5 229,307 - +0.6 229,307 - -0.7 229,307 - -0.4 229,310 + -0.8 229,312 + +0.6 229,312 + -0.4 229,312 + -0.4 229,312 + -1.4 229,312 + -1.3 229,312 + +0.1 229,312 + +0.0 229,312 + +0.3 229,312 + -1.6 229,312 + -0.0 229,312 + -0.2 229,313 - -0.1 229,313 - +0.6 229,313 - -0.4 229,313 - -0.3 229,313 - +0.3 229,313 - +0.3 229,313 - -0.4 229,313 - +0.2 229,313 - -0.3 229,314 + +0.5 229,314 + -0.2 229,315 - +0.3 229,332 - +1.0 229,332 - -0.3 229,332 - -0.4 229,332 - +0.0 229,408 + -0.2 229,408 + +0.1 229,409 - -0.3 229,413 + -0.7 229,413 + -0.1 229,413 + -0.6 229,413 + -0.9 229,413 + -0.2 229,413 + -0.3 229,413 + -0.5 229,413 + -0.6 229,413 + -0.2 229,480 + GFF4859 0.14 -0.3 229,480 + GFF4859 0.14 +0.0 229,480 + GFF4859 0.14 +0.3 229,480 + GFF4859 0.14 -0.2 229,480 + GFF4859 0.14 -0.5 229,481 - GFF4859 0.14 +0.2 229,581 + GFF4859 0.23 +0.9 229,581 + GFF4859 0.23 -1.4 229,581 + GFF4859 0.23 +0.3 229,581 + GFF4859 0.23 -0.1 229,581 + GFF4859 0.23 +0.1 229,582 - GFF4859 0.23 -1.3 229,582 - GFF4859 0.23 -1.7 229,582 - GFF4859 0.23 -1.4 229,582 - GFF4859 0.23 +0.3 229,582 - GFF4859 0.23 -1.2 229,638 + GFF4859 0.29 -0.2 229,639 - GFF4859 0.29 -0.2 229,708 + GFF4859 0.35 +0.8 229,708 + GFF4859 0.35 +0.2 229,709 - GFF4859 0.35 +0.7 229,709 - GFF4859 0.35 -0.6 229,709 - GFF4859 0.35 +0.2 229,709 - GFF4859 0.35 -1.2 229,709 - GFF4859 0.35 +0.1 229,718 + GFF4859 0.36 -0.7 229,718 + GFF4859 0.36 -0.8 229,719 - GFF4859 0.36 -1.2 229,719 - GFF4859 0.36 -0.3 229,719 - GFF4859 0.36 +0.9 229,756 - GFF4859 0.40 -0.5 229,780 + GFF4859 0.42 -1.3 229,781 - GFF4859 0.42 -1.2 229,781 - GFF4859 0.42 -1.4 229,781 - GFF4859 0.42 -0.3 229,930 + GFF4859 0.56 -0.2 229,930 + GFF4859 0.56 -0.2 229,969 + GFF4859 0.60 -0.7 229,970 - GFF4859 0.60 +0.3 230,035 + GFF4859 0.66 -0.6 230,035 + GFF4859 0.66 -0.2 230,035 + GFF4859 0.66 -0.5 230,035 + GFF4859 0.66 -0.4 230,035 + GFF4859 0.66 -0.1 230,124 + GFF4859 0.75 -0.2 230,124 + GFF4859 0.75 -1.1 230,125 - GFF4859 0.75 -0.6 230,125 - GFF4859 0.75 +0.9 230,125 - GFF4859 0.75 +0.6 230,399 + -0.1 230,400 - +0.4 230,400 - -1.2 230,400 - -0.4 230,400 - -1.3 230,400 - -0.1 230,400 - +0.3 230,421 + +1.0 230,421 + -0.5 230,421 + -0.4 230,421 + -1.2 230,422 - -0.4 230,422 - +0.9 230,422 - +0.0 230,422 - -0.2 230,422 - +2.2 230,444 + -0.8 230,445 - -0.0 230,445 - +1.2 230,445 - -0.3 230,445 - -0.3 230,445 - -0.3 230,445 - -0.6 230,445 - -0.5 230,445 - -2.0 230,465 + -0.7 230,466 - +0.6 230,470 + +0.2 230,470 + -0.6 230,471 - +0.5 230,471 - +0.3 230,471 - +0.6 230,471 - -1.2 230,471 - -0.6 230,479 + +0.1 230,479 + -0.4 230,479 + +0.0 230,480 - -0.2 230,480 - -0.5 230,480 - +1.0 230,480 - +0.9 230,520 + -0.3 230,634 + +1.5 230,635 - -0.1 230,635 - -1.1 230,635 - -0.1 230,654 + -0.7 230,654 + +0.6 230,654 + +0.6 230,654 + +0.4 230,654 + -0.0 230,654 + -0.1 230,654 + -0.7 230,654 + -0.5 230,654 + +1.0 230,655 - -1.1 230,655 - +1.0 230,655 - +1.0 230,655 - +0.1 230,655 - +0.6 230,685 + -0.2 230,685 + +0.3 230,724 + +0.6 230,724 + -0.0 230,724 + -0.5 230,724 + +0.8 230,724 + -0.0 230,724 + +1.2 230,724 + -0.2 230,724 + -0.3 230,724 + -0.6 230,724 + -0.1 230,724 + -0.3 230,724 + -0.8 230,724 + -1.1 230,724 + -0.6 230,724 + -0.7 230,724 + -0.4 230,724 + -0.3 230,724 + -0.6 230,724 + -0.7 230,724 + +0.0 230,724 + -0.6 230,724 + -0.9 230,725 - +0.4 230,725 - -0.8 230,725 - +0.4 230,725 - -1.3 230,725 - -0.3 230,725 - -0.6 230,725 - +0.3 230,725 - -0.9 230,725 - -1.4 230,725 - -0.2 230,725 - -0.7 230,725 - -0.4 230,725 - +0.3 230,725 - -0.3 230,725 - +0.6 230,725 - -2.4 230,725 - -0.7 230,725 - -1.4 230,725 - -0.6 230,725 - +0.1 230,725 - +0.4 230,725 - +0.1 230,728 + -0.1 230,728 + +0.1 230,728 + -0.4 230,728 + -0.4 230,728 + -1.9 230,728 + +0.7 230,728 + -1.7 230,728 + -0.6 230,728 + -0.7 230,728 + -0.4 230,728 + +1.1 230,729 - -0.4 230,729 - -0.3 230,729 - -0.3 230,729 - -0.4 230,729 - -0.6 230,729 - +2.0 230,729 - +0.2 230,729 - +1.3 230,729 - +0.3 230,729 - +0.1 230,729 - +0.3 230,729 - -1.0 230,729 - -1.0 230,736 + -0.9 230,736 + +0.0 230,736 + -0.9 230,736 + +0.1 230,736 + -0.7 230,736 + +0.2 230,736 + +0.4 230,737 - +0.0 230,737 - +0.0 230,737 - -0.2 230,737 - -0.6 230,737 - +1.0 230,737 - -0.3 230,737 - -1.8 230,760 + -1.5 230,760 + -0.3 230,761 - -0.2 230,761 - -0.6 230,909 + GFF4860 0.17 -0.7 231,066 + GFF4860 0.32 -0.2 231,066 + GFF4860 0.32 -1.3 231,066 + GFF4860 0.32 +0.1 231,067 - GFF4860 0.32 -0.6 231,067 - GFF4860 0.32 +0.1 231,143 - GFF4860 0.40 +0.6 231,143 - GFF4860 0.40 -0.1 231,216 + GFF4860 0.47 +1.0 231,216 + GFF4860 0.47 -0.6 231,217 - GFF4860 0.47 -0.7 231,217 - GFF4860 0.47 +0.1 231,217 - GFF4860 0.47 +0.7 231,217 - GFF4860 0.47 -1.0 231,217 - GFF4860 0.47 -0.7 231,217 - GFF4860 0.47 +0.7
Or see this region's nucleotide sequence