Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF482 and GFF483 are separated by 56 nucleotides GFF483 and GFF484 are separated by 1 nucleotides GFF484 and GFF485 are separated by 18 nucleotides
GFF482 - Glycine betaine/L-proline transport substrate-binding protein ProX (TC 3.A.1.12.1), at 520,966 to 521,985
GFF482
GFF483 - Fumarate hydratase class I, aerobic (EC 4.2.1.2), at 522,042 to 523,595
GFF483
GFF484 - Glutamate racemase (EC 5.1.1.3), at 523,597 to 524,397
GFF484
GFF485 - hypothetical protein, at 524,416 to 525,201
GFF485
Position (kb) 522
523
524 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 521.155 kb on + strand, within GFF482 at 521.155 kb on + strand, within GFF482 at 521.156 kb on - strand, within GFF482 at 521.156 kb on - strand, within GFF482 at 521.156 kb on - strand, within GFF482 at 521.156 kb on - strand, within GFF482 at 521.156 kb on - strand, within GFF482 at 521.266 kb on + strand, within GFF482 at 521.266 kb on + strand, within GFF482 at 521.267 kb on - strand, within GFF482 at 521.267 kb on - strand, within GFF482 at 521.267 kb on - strand, within GFF482 at 521.311 kb on + strand, within GFF482 at 521.311 kb on + strand, within GFF482 at 521.311 kb on + strand, within GFF482 at 521.311 kb on + strand, within GFF482 at 521.312 kb on - strand, within GFF482 at 521.312 kb on - strand, within GFF482 at 521.312 kb on - strand, within GFF482 at 521.312 kb on - strand, within GFF482 at 521.335 kb on + strand, within GFF482 at 521.335 kb on + strand, within GFF482 at 521.336 kb on - strand, within GFF482 at 521.336 kb on - strand, within GFF482 at 521.366 kb on - strand, within GFF482 at 521.366 kb on - strand, within GFF482 at 521.506 kb on + strand, within GFF482 at 521.507 kb on - strand, within GFF482 at 521.545 kb on + strand, within GFF482 at 521.545 kb on + strand, within GFF482 at 521.545 kb on + strand, within GFF482 at 521.545 kb on + strand, within GFF482 at 521.546 kb on - strand, within GFF482 at 521.546 kb on - strand, within GFF482 at 521.546 kb on - strand, within GFF482 at 521.602 kb on + strand, within GFF482 at 521.602 kb on + strand, within GFF482 at 521.602 kb on + strand, within GFF482 at 521.602 kb on + strand, within GFF482 at 521.602 kb on + strand, within GFF482 at 521.602 kb on + strand, within GFF482 at 521.602 kb on + strand, within GFF482 at 521.602 kb on + strand, within GFF482 at 521.602 kb on + strand, within GFF482 at 521.603 kb on - strand, within GFF482 at 521.603 kb on - strand, within GFF482 at 521.603 kb on - strand, within GFF482 at 521.603 kb on - strand, within GFF482 at 521.603 kb on - strand, within GFF482 at 521.603 kb on - strand, within GFF482 at 521.603 kb on - strand, within GFF482 at 521.603 kb on - strand, within GFF482 at 521.603 kb on - strand, within GFF482 at 521.605 kb on + strand, within GFF482 at 521.605 kb on + strand, within GFF482 at 521.605 kb on + strand, within GFF482 at 521.605 kb on + strand, within GFF482 at 521.605 kb on + strand, within GFF482 at 521.605 kb on + strand, within GFF482 at 521.605 kb on + strand, within GFF482 at 521.605 kb on + strand, within GFF482 at 521.606 kb on - strand, within GFF482 at 521.606 kb on - strand, within GFF482 at 521.606 kb on - strand, within GFF482 at 521.606 kb on - strand, within GFF482 at 521.606 kb on - strand, within GFF482 at 521.606 kb on - strand, within GFF482 at 521.620 kb on + strand, within GFF482 at 521.621 kb on - strand, within GFF482 at 521.621 kb on - strand, within GFF482 at 521.737 kb on + strand, within GFF482 at 521.737 kb on + strand, within GFF482 at 521.737 kb on + strand, within GFF482 at 521.738 kb on - strand, within GFF482 at 521.738 kb on - strand, within GFF482 at 521.738 kb on - strand, within GFF482 at 522.000 kb on + strand at 522.000 kb on + strand at 522.099 kb on + strand at 522.099 kb on + strand at 522.099 kb on + strand at 522.099 kb on + strand at 522.099 kb on + strand at 522.099 kb on + strand at 522.099 kb on + strand at 522.099 kb on + strand at 522.099 kb on + strand at 522.099 kb on + strand at 522.099 kb on + strand at 522.099 kb on + strand at 522.099 kb on + strand at 522.099 kb on + strand at 522.100 kb on - strand at 522.100 kb on - strand at 522.100 kb on - strand at 522.100 kb on - strand at 522.100 kb on - strand at 522.100 kb on - strand at 522.100 kb on - strand at 522.100 kb on - strand at 522.100 kb on - strand at 522.100 kb on - strand at 522.100 kb on - strand at 522.108 kb on + strand at 522.108 kb on + strand at 522.108 kb on + strand at 522.108 kb on + strand at 522.108 kb on + strand at 522.108 kb on + strand at 522.108 kb on + strand at 522.108 kb on + strand at 522.108 kb on + strand at 522.108 kb on + strand at 522.108 kb on + strand at 522.109 kb on - strand at 522.109 kb on - strand at 522.109 kb on - strand at 522.109 kb on - strand at 522.109 kb on - strand at 522.109 kb on - strand at 522.109 kb on - strand at 522.109 kb on - strand at 522.109 kb on - strand at 522.109 kb on - strand at 522.111 kb on + strand at 522.111 kb on + strand at 522.111 kb on + strand at 522.111 kb on + strand at 522.111 kb on + strand at 522.111 kb on + strand at 522.111 kb on + strand at 522.112 kb on - strand at 522.112 kb on - strand at 522.112 kb on - strand at 522.112 kb on - strand at 522.126 kb on + strand at 522.126 kb on + strand at 522.126 kb on + strand at 522.126 kb on + strand at 522.126 kb on + strand at 522.126 kb on + strand at 522.126 kb on + strand at 522.127 kb on - strand at 522.127 kb on - strand at 522.127 kb on - strand at 522.127 kb on - strand at 522.127 kb on - strand at 522.127 kb on - strand at 522.127 kb on - strand at 522.150 kb on + strand at 522.150 kb on + strand at 522.351 kb on + strand, within GFF483 at 522.351 kb on + strand, within GFF483 at 522.351 kb on + strand, within GFF483 at 522.351 kb on + strand, within GFF483 at 522.352 kb on - strand, within GFF483 at 522.352 kb on - strand, within GFF483 at 522.759 kb on + strand, within GFF483 at 522.759 kb on + strand, within GFF483 at 522.759 kb on + strand, within GFF483 at 522.759 kb on + strand, within GFF483 at 522.760 kb on - strand, within GFF483 at 522.760 kb on - strand, within GFF483 at 522.760 kb on - strand, within GFF483 at 522.760 kb on - strand, within GFF483 at 522.760 kb on - strand, within GFF483 at 522.840 kb on + strand, within GFF483 at 522.840 kb on + strand, within GFF483 at 522.840 kb on + strand, within GFF483 at 522.840 kb on + strand, within GFF483 at 522.840 kb on + strand, within GFF483 at 522.840 kb on + strand, within GFF483 at 522.840 kb on + strand, within GFF483 at 522.840 kb on + strand, within GFF483 at 522.840 kb on + strand, within GFF483 at 522.841 kb on - strand, within GFF483 at 522.841 kb on - strand, within GFF483 at 522.841 kb on - strand, within GFF483 at 522.841 kb on - strand, within GFF483 at 522.841 kb on - strand, within GFF483 at 522.841 kb on - strand, within GFF483 at 522.841 kb on - strand, within GFF483 at 522.841 kb on - strand, within GFF483 at 522.841 kb on - strand, within GFF483 at 522.841 kb on - strand, within GFF483 at 522.936 kb on + strand, within GFF483 at 522.936 kb on + strand, within GFF483 at 522.937 kb on - strand, within GFF483 at 522.937 kb on - strand, within GFF483 at 523.176 kb on + strand, within GFF483 at 523.176 kb on + strand, within GFF483 at 523.176 kb on + strand, within GFF483 at 523.176 kb on + strand, within GFF483 at 523.176 kb on + strand, within GFF483 at 523.176 kb on + strand, within GFF483 at 523.176 kb on + strand, within GFF483 at 523.176 kb on + strand, within GFF483 at 523.176 kb on + strand, within GFF483 at 523.176 kb on + strand, within GFF483 at 523.176 kb on + strand, within GFF483 at 523.176 kb on + strand, within GFF483 at 523.176 kb on + strand, within GFF483 at 523.176 kb on + strand, within GFF483 at 523.176 kb on + strand, within GFF483 at 523.176 kb on + strand, within GFF483 at 523.176 kb on + strand, within GFF483 at 523.176 kb on + strand, within GFF483 at 523.177 kb on - strand, within GFF483 at 523.177 kb on - strand, within GFF483 at 523.177 kb on - strand, within GFF483 at 523.177 kb on - strand, within GFF483 at 523.177 kb on - strand, within GFF483 at 523.177 kb on - strand, within GFF483 at 523.177 kb on - strand, within GFF483 at 523.177 kb on - strand, within GFF483 at 523.177 kb on - strand, within GFF483 at 523.177 kb on - strand, within GFF483 at 523.177 kb on - strand, within GFF483 at 523.177 kb on - strand, within GFF483 at 523.179 kb on + strand, within GFF483 at 523.179 kb on + strand, within GFF483 at 523.179 kb on + strand, within GFF483 at 523.179 kb on + strand, within GFF483 at 523.179 kb on + strand, within GFF483 at 523.179 kb on + strand, within GFF483 at 523.179 kb on + strand, within GFF483 at 523.179 kb on + strand, within GFF483 at 523.179 kb on + strand, within GFF483 at 523.180 kb on - strand, within GFF483 at 523.180 kb on - strand, within GFF483 at 523.180 kb on - strand, within GFF483 at 523.180 kb on - strand, within GFF483 at 523.180 kb on - strand, within GFF483 at 523.180 kb on - strand, within GFF483 at 523.180 kb on - strand, within GFF483 at 523.359 kb on + strand, within GFF483 at 523.359 kb on + strand, within GFF483 at 523.359 kb on + strand, within GFF483 at 523.359 kb on + strand, within GFF483 at 523.359 kb on + strand, within GFF483 at 523.360 kb on - strand, within GFF483 at 523.360 kb on - strand, within GFF483 at 523.360 kb on - strand, within GFF483 at 523.360 kb on - strand, within GFF483 at 523.360 kb on - strand, within GFF483 at 523.360 kb on - strand, within GFF483 at 523.386 kb on + strand, within GFF483 at 523.387 kb on - strand, within GFF483 at 523.387 kb on - strand, within GFF483 at 523.387 kb on - strand, within GFF483 at 523.387 kb on - strand, within GFF483 at 523.455 kb on + strand at 523.455 kb on + strand at 523.455 kb on + strand at 523.456 kb on - strand at 523.456 kb on - strand at 523.456 kb on - strand at 523.456 kb on - strand at 523.607 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 521,155 + GFF482 0.19 -0.3 521,155 + GFF482 0.19 -0.2 521,156 - GFF482 0.19 -0.5 521,156 - GFF482 0.19 +0.6 521,156 - GFF482 0.19 -2.1 521,156 - GFF482 0.19 -1.2 521,156 - GFF482 0.19 +0.3 521,266 + GFF482 0.29 -0.1 521,266 + GFF482 0.29 -0.0 521,267 - GFF482 0.30 -0.1 521,267 - GFF482 0.30 -0.5 521,267 - GFF482 0.30 -0.2 521,311 + GFF482 0.34 +0.3 521,311 + GFF482 0.34 +1.0 521,311 + GFF482 0.34 -0.6 521,311 + GFF482 0.34 -0.9 521,312 - GFF482 0.34 +0.7 521,312 - GFF482 0.34 -0.1 521,312 - GFF482 0.34 -1.6 521,312 - GFF482 0.34 -0.2 521,335 + GFF482 0.36 -0.2 521,335 + GFF482 0.36 -1.0 521,336 - GFF482 0.36 -0.8 521,336 - GFF482 0.36 +0.0 521,366 - GFF482 0.39 +0.3 521,366 - GFF482 0.39 -1.1 521,506 + GFF482 0.53 -0.3 521,507 - GFF482 0.53 +0.1 521,545 + GFF482 0.57 -0.7 521,545 + GFF482 0.57 -0.2 521,545 + GFF482 0.57 -0.0 521,545 + GFF482 0.57 +0.1 521,546 - GFF482 0.57 +1.6 521,546 - GFF482 0.57 -0.0 521,546 - GFF482 0.57 -0.4 521,602 + GFF482 0.62 -0.3 521,602 + GFF482 0.62 +0.9 521,602 + GFF482 0.62 -0.0 521,602 + GFF482 0.62 -1.2 521,602 + GFF482 0.62 -0.5 521,602 + GFF482 0.62 -0.1 521,602 + GFF482 0.62 +0.3 521,602 + GFF482 0.62 +0.2 521,602 + GFF482 0.62 -0.3 521,603 - GFF482 0.62 -0.3 521,603 - GFF482 0.62 -0.0 521,603 - GFF482 0.62 +0.6 521,603 - GFF482 0.62 -0.4 521,603 - GFF482 0.62 +0.1 521,603 - GFF482 0.62 -0.1 521,603 - GFF482 0.62 -1.3 521,603 - GFF482 0.62 -1.1 521,603 - GFF482 0.62 -1.8 521,605 + GFF482 0.63 +0.9 521,605 + GFF482 0.63 -1.5 521,605 + GFF482 0.63 -0.4 521,605 + GFF482 0.63 -0.3 521,605 + GFF482 0.63 +0.3 521,605 + GFF482 0.63 +0.4 521,605 + GFF482 0.63 +0.7 521,605 + GFF482 0.63 +0.1 521,606 - GFF482 0.63 -0.7 521,606 - GFF482 0.63 +0.6 521,606 - GFF482 0.63 -0.1 521,606 - GFF482 0.63 +0.1 521,606 - GFF482 0.63 +0.1 521,606 - GFF482 0.63 -0.8 521,620 + GFF482 0.64 +1.1 521,621 - GFF482 0.64 -0.6 521,621 - GFF482 0.64 +0.6 521,737 + GFF482 0.76 -1.8 521,737 + GFF482 0.76 +2.0 521,737 + GFF482 0.76 -1.6 521,738 - GFF482 0.76 -0.0 521,738 - GFF482 0.76 +0.1 521,738 - GFF482 0.76 -0.4 522,000 + -0.8 522,000 + +2.1 522,099 + +0.6 522,099 + +0.8 522,099 + -0.1 522,099 + -0.8 522,099 + +0.2 522,099 + +0.4 522,099 + +0.1 522,099 + -0.3 522,099 + -1.3 522,099 + +0.4 522,099 + -0.2 522,099 + -0.0 522,099 + +0.5 522,099 + +0.6 522,100 - -0.9 522,100 - +0.4 522,100 - +0.4 522,100 - +0.6 522,100 - -1.4 522,100 - -1.0 522,100 - -0.6 522,100 - -1.0 522,100 - -0.7 522,100 - +1.3 522,100 - +0.3 522,108 + -0.9 522,108 + -2.5 522,108 + +0.1 522,108 + -0.1 522,108 + -1.0 522,108 + -0.7 522,108 + +0.0 522,108 + +0.1 522,108 + -0.4 522,108 + +0.4 522,108 + -0.7 522,109 - -0.3 522,109 - +2.1 522,109 - +0.9 522,109 - -0.3 522,109 - +0.3 522,109 - +0.3 522,109 - -0.2 522,109 - +0.8 522,109 - -0.9 522,109 - -0.9 522,111 + -0.6 522,111 + +0.1 522,111 + -1.6 522,111 + +1.2 522,111 + -0.6 522,111 + -0.3 522,111 + -0.3 522,112 - +0.5 522,112 - -0.4 522,112 - -0.7 522,112 - -0.1 522,126 + -0.1 522,126 + +0.6 522,126 + +0.5 522,126 + -0.3 522,126 + +1.0 522,126 + -0.1 522,126 + +0.0 522,127 - -2.0 522,127 - -0.9 522,127 - +0.4 522,127 - -0.0 522,127 - -1.9 522,127 - -0.3 522,127 - -2.2 522,150 + +0.0 522,150 + +0.8 522,351 + GFF483 0.20 -1.5 522,351 + GFF483 0.20 +0.1 522,351 + GFF483 0.20 -0.2 522,351 + GFF483 0.20 -2.1 522,352 - GFF483 0.20 -0.3 522,352 - GFF483 0.20 -0.4 522,759 + GFF483 0.46 +0.0 522,759 + GFF483 0.46 -0.6 522,759 + GFF483 0.46 +2.0 522,759 + GFF483 0.46 +0.1 522,760 - GFF483 0.46 +0.2 522,760 - GFF483 0.46 -0.1 522,760 - GFF483 0.46 -0.4 522,760 - GFF483 0.46 +0.2 522,760 - GFF483 0.46 -0.1 522,840 + GFF483 0.51 -0.6 522,840 + GFF483 0.51 +0.6 522,840 + GFF483 0.51 -0.6 522,840 + GFF483 0.51 -0.5 522,840 + GFF483 0.51 +1.3 522,840 + GFF483 0.51 +1.6 522,840 + GFF483 0.51 -0.6 522,840 + GFF483 0.51 -0.8 522,840 + GFF483 0.51 +0.1 522,841 - GFF483 0.51 -1.2 522,841 - GFF483 0.51 +0.1 522,841 - GFF483 0.51 +0.3 522,841 - GFF483 0.51 -0.6 522,841 - GFF483 0.51 -1.0 522,841 - GFF483 0.51 -1.5 522,841 - GFF483 0.51 -0.0 522,841 - GFF483 0.51 +1.4 522,841 - GFF483 0.51 -1.8 522,841 - GFF483 0.51 -0.9 522,936 + GFF483 0.58 -0.4 522,936 + GFF483 0.58 +0.0 522,937 - GFF483 0.58 -1.4 522,937 - GFF483 0.58 +0.6 523,176 + GFF483 0.73 -0.3 523,176 + GFF483 0.73 -0.3 523,176 + GFF483 0.73 +1.3 523,176 + GFF483 0.73 +0.1 523,176 + GFF483 0.73 -0.3 523,176 + GFF483 0.73 -1.0 523,176 + GFF483 0.73 -0.0 523,176 + GFF483 0.73 -0.4 523,176 + GFF483 0.73 -0.0 523,176 + GFF483 0.73 +0.9 523,176 + GFF483 0.73 -1.1 523,176 + GFF483 0.73 +0.6 523,176 + GFF483 0.73 -0.4 523,176 + GFF483 0.73 +1.1 523,176 + GFF483 0.73 -1.4 523,176 + GFF483 0.73 -0.7 523,176 + GFF483 0.73 -3.1 523,176 + GFF483 0.73 -0.8 523,177 - GFF483 0.73 +0.1 523,177 - GFF483 0.73 -1.3 523,177 - GFF483 0.73 +0.4 523,177 - GFF483 0.73 -2.5 523,177 - GFF483 0.73 +1.6 523,177 - GFF483 0.73 +0.6 523,177 - GFF483 0.73 -0.6 523,177 - GFF483 0.73 -1.7 523,177 - GFF483 0.73 +0.2 523,177 - GFF483 0.73 -0.5 523,177 - GFF483 0.73 -1.4 523,177 - GFF483 0.73 -0.8 523,179 + GFF483 0.73 -0.8 523,179 + GFF483 0.73 -0.9 523,179 + GFF483 0.73 -0.4 523,179 + GFF483 0.73 +0.2 523,179 + GFF483 0.73 -0.6 523,179 + GFF483 0.73 -0.3 523,179 + GFF483 0.73 +0.2 523,179 + GFF483 0.73 -0.3 523,179 + GFF483 0.73 -0.6 523,180 - GFF483 0.73 -1.1 523,180 - GFF483 0.73 -0.8 523,180 - GFF483 0.73 -1.3 523,180 - GFF483 0.73 +1.6 523,180 - GFF483 0.73 -0.5 523,180 - GFF483 0.73 -0.3 523,180 - GFF483 0.73 +0.6 523,359 + GFF483 0.85 -0.3 523,359 + GFF483 0.85 -0.4 523,359 + GFF483 0.85 -0.7 523,359 + GFF483 0.85 +0.3 523,359 + GFF483 0.85 -1.0 523,360 - GFF483 0.85 -0.3 523,360 - GFF483 0.85 -0.8 523,360 - GFF483 0.85 -0.0 523,360 - GFF483 0.85 -1.9 523,360 - GFF483 0.85 +1.0 523,360 - GFF483 0.85 -0.6 523,386 + GFF483 0.86 -0.6 523,387 - GFF483 0.87 -0.5 523,387 - GFF483 0.87 +0.4 523,387 - GFF483 0.87 -0.4 523,387 - GFF483 0.87 +0.0 523,455 + -0.3 523,455 + -0.8 523,455 + -0.8 523,456 - +0.3 523,456 - +0.1 523,456 - +0.2 523,456 - -1.8 523,607 + -0.7
Or see this region's nucleotide sequence