Strain Fitness in Variovorax sp. SCN45 around GFF4743

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4742 and GFF4743 are separated by 36 nucleotidesGFF4743 and GFF4744 are separated by 78 nucleotides GFF4742 - ABC transporter, substrate-binding protein RSc1750, at 108,394 to 109,674 GFF4742 GFF4743 - Aspartate aminotransferase (EC 2.6.1.1), at 109,711 to 110,883 GFF4743 GFF4744 - Permease of the drug/metabolite transporter (DMT) superfamily, at 110,962 to 111,897 GFF4744 Position (kb) 109 110 111Strain fitness (log2 ratio) -2 -1 0 1 2at 108.817 kb on + strand, within GFF4742at 108.818 kb on - strand, within GFF4742at 108.950 kb on - strand, within GFF4742at 108.967 kb on + strand, within GFF4742at 108.967 kb on + strand, within GFF4742at 108.967 kb on + strand, within GFF4742at 108.968 kb on - strand, within GFF4742at 108.968 kb on - strand, within GFF4742at 108.968 kb on - strand, within GFF4742at 109.087 kb on + strand, within GFF4742at 109.088 kb on - strand, within GFF4742at 109.088 kb on - strand, within GFF4742at 109.088 kb on - strand, within GFF4742at 109.088 kb on - strand, within GFF4742at 109.201 kb on + strand, within GFF4742at 109.201 kb on + strand, within GFF4742at 109.201 kb on + strand, within GFF4742at 109.201 kb on + strand, within GFF4742at 109.201 kb on + strand, within GFF4742at 109.201 kb on + strand, within GFF4742at 109.201 kb on + strand, within GFF4742at 109.202 kb on - strand, within GFF4742at 109.202 kb on - strand, within GFF4742at 109.202 kb on - strand, within GFF4742at 109.202 kb on - strand, within GFF4742at 109.202 kb on - strand, within GFF4742at 109.202 kb on - strand, within GFF4742at 109.202 kb on - strand, within GFF4742at 109.202 kb on - strand, within GFF4742at 109.202 kb on - strand, within GFF4742at 109.202 kb on - strand, within GFF4742at 109.203 kb on + strand, within GFF4742at 109.203 kb on + strand, within GFF4742at 109.203 kb on + strand, within GFF4742at 109.203 kb on + strand, within GFF4742at 109.203 kb on + strand, within GFF4742at 109.204 kb on - strand, within GFF4742at 109.204 kb on - strand, within GFF4742at 109.204 kb on - strand, within GFF4742at 109.210 kb on + strand, within GFF4742at 109.210 kb on + strand, within GFF4742at 109.211 kb on - strand, within GFF4742at 109.363 kb on + strand, within GFF4742at 109.363 kb on + strand, within GFF4742at 109.363 kb on + strand, within GFF4742at 109.363 kb on + strand, within GFF4742at 109.363 kb on + strand, within GFF4742at 109.363 kb on + strand, within GFF4742at 109.363 kb on + strand, within GFF4742at 109.363 kb on + strand, within GFF4742at 109.363 kb on + strand, within GFF4742at 109.364 kb on - strand, within GFF4742at 109.364 kb on - strand, within GFF4742at 109.364 kb on - strand, within GFF4742at 109.364 kb on - strand, within GFF4742at 109.364 kb on - strand, within GFF4742at 109.364 kb on - strand, within GFF4742at 109.364 kb on - strand, within GFF4742at 109.364 kb on - strand, within GFF4742at 109.364 kb on - strand, within GFF4742at 109.403 kb on + strand, within GFF4742at 109.403 kb on + strand, within GFF4742at 109.403 kb on + strand, within GFF4742at 109.404 kb on - strand, within GFF4742at 109.404 kb on - strand, within GFF4742at 109.404 kb on - strand, within GFF4742at 109.404 kb on - strand, within GFF4742at 109.404 kb on - strand, within GFF4742at 109.404 kb on - strand, within GFF4742at 109.480 kb on + strand, within GFF4742at 109.481 kb on - strand, within GFF4742at 109.598 kb on - strandat 109.879 kb on + strand, within GFF4743at 109.880 kb on - strand, within GFF4743at 110.305 kb on + strand, within GFF4743at 110.305 kb on + strand, within GFF4743at 110.305 kb on + strand, within GFF4743at 110.306 kb on - strand, within GFF4743at 110.306 kb on - strand, within GFF4743at 110.317 kb on + strand, within GFF4743at 110.317 kb on + strand, within GFF4743at 110.317 kb on + strand, within GFF4743at 110.317 kb on + strand, within GFF4743at 110.320 kb on + strand, within GFF4743at 110.320 kb on + strand, within GFF4743at 110.320 kb on + strand, within GFF4743at 110.320 kb on + strand, within GFF4743at 110.320 kb on + strand, within GFF4743at 110.321 kb on - strand, within GFF4743at 110.321 kb on - strand, within GFF4743at 110.321 kb on - strand, within GFF4743at 110.496 kb on + strand, within GFF4743at 110.496 kb on + strand, within GFF4743at 110.496 kb on + strand, within GFF4743at 110.497 kb on - strand, within GFF4743at 110.497 kb on - strand, within GFF4743at 110.665 kb on + strand, within GFF4743at 110.665 kb on + strand, within GFF4743at 110.665 kb on + strand, within GFF4743at 110.665 kb on + strand, within GFF4743at 110.665 kb on + strand, within GFF4743at 110.665 kb on + strand, within GFF4743at 110.665 kb on + strand, within GFF4743at 110.665 kb on + strand, within GFF4743at 110.665 kb on + strand, within GFF4743at 110.665 kb on + strand, within GFF4743at 110.665 kb on + strand, within GFF4743at 110.665 kb on + strand, within GFF4743at 110.665 kb on + strand, within GFF4743at 110.666 kb on - strand, within GFF4743at 110.666 kb on - strand, within GFF4743at 110.666 kb on - strand, within GFF4743at 110.666 kb on - strand, within GFF4743at 110.666 kb on - strand, within GFF4743at 110.666 kb on - strand, within GFF4743at 110.666 kb on - strand, within GFF4743at 110.666 kb on - strand, within GFF4743at 110.666 kb on - strand, within GFF4743at 110.905 kb on + strandat 110.905 kb on + strandat 110.906 kb on - strandat 111.205 kb on + strand, within GFF4744at 111.331 kb on + strand, within GFF4744at 111.331 kb on + strand, within GFF4744at 111.331 kb on + strand, within GFF4744at 111.332 kb on - strand, within GFF4744at 111.637 kb on + strand, within GFF4744at 111.637 kb on + strand, within GFF4744at 111.638 kb on - strand, within GFF4744at 111.638 kb on - strand, within GFF4744at 111.640 kb on + strand, within GFF4744at 111.640 kb on + strand, within GFF4744at 111.640 kb on + strand, within GFF4744at 111.641 kb on - strand, within GFF4744at 111.641 kb on - strand, within GFF4744at 111.720 kb on - strand, within GFF4744at 111.720 kb on - strand, within GFF4744

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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108,817 + GFF4742 0.33 +0.6
108,818 - GFF4742 0.33 +2.0
108,950 - GFF4742 0.43 +0.2
108,967 + GFF4742 0.45 +0.8
108,967 + GFF4742 0.45 -0.7
108,967 + GFF4742 0.45 -0.6
108,968 - GFF4742 0.45 +1.0
108,968 - GFF4742 0.45 -0.6
108,968 - GFF4742 0.45 -0.3
109,087 + GFF4742 0.54 -0.6
109,088 - GFF4742 0.54 -1.1
109,088 - GFF4742 0.54 -0.3
109,088 - GFF4742 0.54 +0.8
109,088 - GFF4742 0.54 -0.6
109,201 + GFF4742 0.63 +1.5
109,201 + GFF4742 0.63 -0.5
109,201 + GFF4742 0.63 -0.2
109,201 + GFF4742 0.63 +2.2
109,201 + GFF4742 0.63 -0.7
109,201 + GFF4742 0.63 -0.1
109,201 + GFF4742 0.63 -0.6
109,202 - GFF4742 0.63 +0.0
109,202 - GFF4742 0.63 +0.1
109,202 - GFF4742 0.63 -0.6
109,202 - GFF4742 0.63 +0.0
109,202 - GFF4742 0.63 -0.2
109,202 - GFF4742 0.63 -0.3
109,202 - GFF4742 0.63 +0.1
109,202 - GFF4742 0.63 -0.9
109,202 - GFF4742 0.63 -0.1
109,202 - GFF4742 0.63 -0.2
109,203 + GFF4742 0.63 +0.8
109,203 + GFF4742 0.63 -1.0
109,203 + GFF4742 0.63 +0.3
109,203 + GFF4742 0.63 -0.2
109,203 + GFF4742 0.63 +0.1
109,204 - GFF4742 0.63 -0.3
109,204 - GFF4742 0.63 -1.3
109,204 - GFF4742 0.63 -0.5
109,210 + GFF4742 0.64 -0.7
109,210 + GFF4742 0.64 +1.6
109,211 - GFF4742 0.64 +0.2
109,363 + GFF4742 0.76 -1.8
109,363 + GFF4742 0.76 +1.4
109,363 + GFF4742 0.76 -0.7
109,363 + GFF4742 0.76 +0.5
109,363 + GFF4742 0.76 -0.3
109,363 + GFF4742 0.76 +0.9
109,363 + GFF4742 0.76 -0.1
109,363 + GFF4742 0.76 -1.1
109,363 + GFF4742 0.76 -0.7
109,364 - GFF4742 0.76 +0.0
109,364 - GFF4742 0.76 +0.1
109,364 - GFF4742 0.76 +1.6
109,364 - GFF4742 0.76 +0.5
109,364 - GFF4742 0.76 -1.9
109,364 - GFF4742 0.76 +0.6
109,364 - GFF4742 0.76 -0.2
109,364 - GFF4742 0.76 +2.0
109,364 - GFF4742 0.76 -0.2
109,403 + GFF4742 0.79 -0.5
109,403 + GFF4742 0.79 -0.8
109,403 + GFF4742 0.79 -1.2
109,404 - GFF4742 0.79 -0.4
109,404 - GFF4742 0.79 -0.5
109,404 - GFF4742 0.79 -1.1
109,404 - GFF4742 0.79 +1.6
109,404 - GFF4742 0.79 -1.5
109,404 - GFF4742 0.79 -1.2
109,480 + GFF4742 0.85 +0.3
109,481 - GFF4742 0.85 +0.5
109,598 - +1.5
109,879 + GFF4743 0.14 +0.3
109,880 - GFF4743 0.14 -0.4
110,305 + GFF4743 0.51 -0.8
110,305 + GFF4743 0.51 +1.2
110,305 + GFF4743 0.51 -0.3
110,306 - GFF4743 0.51 -0.3
110,306 - GFF4743 0.51 +0.0
110,317 + GFF4743 0.52 -0.2
110,317 + GFF4743 0.52 +1.2
110,317 + GFF4743 0.52 -1.4
110,317 + GFF4743 0.52 +1.0
110,320 + GFF4743 0.52 +0.3
110,320 + GFF4743 0.52 -0.4
110,320 + GFF4743 0.52 +0.9
110,320 + GFF4743 0.52 +0.3
110,320 + GFF4743 0.52 +0.2
110,321 - GFF4743 0.52 -0.9
110,321 - GFF4743 0.52 -0.1
110,321 - GFF4743 0.52 -0.1
110,496 + GFF4743 0.67 -0.3
110,496 + GFF4743 0.67 +1.3
110,496 + GFF4743 0.67 -0.2
110,497 - GFF4743 0.67 -0.6
110,497 - GFF4743 0.67 +1.2
110,665 + GFF4743 0.81 +0.3
110,665 + GFF4743 0.81 +1.2
110,665 + GFF4743 0.81 +0.3
110,665 + GFF4743 0.81 -0.4
110,665 + GFF4743 0.81 +0.0
110,665 + GFF4743 0.81 +0.6
110,665 + GFF4743 0.81 -0.9
110,665 + GFF4743 0.81 -0.9
110,665 + GFF4743 0.81 +0.3
110,665 + GFF4743 0.81 -0.0
110,665 + GFF4743 0.81 +0.9
110,665 + GFF4743 0.81 -0.2
110,665 + GFF4743 0.81 +0.4
110,666 - GFF4743 0.81 -1.6
110,666 - GFF4743 0.81 -1.6
110,666 - GFF4743 0.81 -0.9
110,666 - GFF4743 0.81 -0.7
110,666 - GFF4743 0.81 +0.2
110,666 - GFF4743 0.81 +1.2
110,666 - GFF4743 0.81 +0.4
110,666 - GFF4743 0.81 -0.3
110,666 - GFF4743 0.81 +0.6
110,905 + +0.3
110,905 + +1.0
110,906 - +0.3
111,205 + GFF4744 0.26 -0.7
111,331 + GFF4744 0.39 +0.9
111,331 + GFF4744 0.39 -0.2
111,331 + GFF4744 0.39 -0.7
111,332 - GFF4744 0.40 +0.2
111,637 + GFF4744 0.72 -1.2
111,637 + GFF4744 0.72 -0.2
111,638 - GFF4744 0.72 -0.2
111,638 - GFF4744 0.72 -2.7
111,640 + GFF4744 0.72 +1.2
111,640 + GFF4744 0.72 -0.1
111,640 + GFF4744 0.72 -0.2
111,641 - GFF4744 0.73 -0.5
111,641 - GFF4744 0.73 -0.7
111,720 - GFF4744 0.81 -0.9
111,720 - GFF4744 0.81 -0.3

Or see this region's nucleotide sequence