Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4600 and GFF4601 are separated by 120 nucleotides GFF4601 and GFF4602 are separated by 36 nucleotides GFF4602 and GFF4603 are separated by 26 nucleotides
GFF4600 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 242,066 to 243,241
GFF4600
GFF4601 - Enoyl-CoA hydratase (EC 4.2.1.17), at 243,362 to 244,126
GFF4601
GFF4602 - 2-hydroxychromene-2-carboxylate isomerase family protein, at 244,163 to 244,759
GFF4602
GFF4603 - Short-chain dehydrogenase, associated with 2-hydroxychromene-2-carboxylate isomerase family protein, at 244,786 to 245,535
GFF4603
Position (kb) 243
244
245 Strain fitness (log2 ratio) -1
0
1
2 at 242.415 kb on + strand, within GFF4600 at 242.415 kb on + strand, within GFF4600 at 242.415 kb on + strand, within GFF4600 at 242.416 kb on - strand, within GFF4600 at 242.416 kb on - strand, within GFF4600 at 242.466 kb on + strand, within GFF4600 at 242.466 kb on + strand, within GFF4600 at 242.466 kb on + strand, within GFF4600 at 242.466 kb on + strand, within GFF4600 at 242.466 kb on + strand, within GFF4600 at 242.466 kb on + strand, within GFF4600 at 242.466 kb on + strand, within GFF4600 at 242.466 kb on + strand, within GFF4600 at 242.467 kb on - strand, within GFF4600 at 242.467 kb on - strand, within GFF4600 at 242.467 kb on - strand, within GFF4600 at 242.622 kb on + strand, within GFF4600 at 242.622 kb on + strand, within GFF4600 at 242.623 kb on - strand, within GFF4600 at 242.623 kb on - strand, within GFF4600 at 242.623 kb on - strand, within GFF4600 at 242.623 kb on - strand, within GFF4600 at 242.733 kb on + strand, within GFF4600 at 242.734 kb on - strand, within GFF4600 at 242.734 kb on - strand, within GFF4600 at 242.922 kb on + strand, within GFF4600 at 242.923 kb on - strand, within GFF4600 at 243.230 kb on - strand at 243.254 kb on + strand at 243.255 kb on - strand at 243.334 kb on + strand at 243.334 kb on + strand at 243.334 kb on + strand at 243.334 kb on + strand at 243.335 kb on - strand at 243.335 kb on - strand at 243.335 kb on - strand at 243.681 kb on + strand, within GFF4601 at 243.777 kb on + strand, within GFF4601 at 243.777 kb on + strand, within GFF4601 at 243.777 kb on + strand, within GFF4601 at 243.778 kb on - strand, within GFF4601 at 243.778 kb on - strand, within GFF4601 at 243.778 kb on - strand, within GFF4601 at 243.778 kb on - strand, within GFF4601 at 243.778 kb on - strand, within GFF4601 at 244.035 kb on + strand, within GFF4601 at 244.035 kb on + strand, within GFF4601 at 244.035 kb on + strand, within GFF4601 at 244.035 kb on + strand, within GFF4601 at 244.036 kb on - strand, within GFF4601 at 244.036 kb on - strand, within GFF4601 at 244.141 kb on + strand at 244.141 kb on + strand at 244.142 kb on - strand at 244.142 kb on - strand at 244.419 kb on + strand, within GFF4602 at 244.419 kb on + strand, within GFF4602 at 244.420 kb on - strand, within GFF4602 at 244.434 kb on + strand, within GFF4602 at 244.435 kb on - strand, within GFF4602 at 244.435 kb on - strand, within GFF4602 at 244.435 kb on - strand, within GFF4602 at 244.435 kb on - strand, within GFF4602 at 244.575 kb on + strand, within GFF4602 at 244.575 kb on + strand, within GFF4602 at 244.575 kb on + strand, within GFF4602 at 244.575 kb on + strand, within GFF4602 at 244.575 kb on + strand, within GFF4602 at 244.575 kb on + strand, within GFF4602 at 244.576 kb on - strand, within GFF4602 at 244.576 kb on - strand, within GFF4602 at 244.576 kb on - strand, within GFF4602 at 244.576 kb on - strand, within GFF4602 at 244.576 kb on - strand, within GFF4602 at 244.710 kb on + strand at 244.711 kb on - strand at 244.711 kb on - strand at 244.738 kb on - strand at 244.862 kb on + strand, within GFF4603 at 244.862 kb on + strand, within GFF4603 at 244.862 kb on + strand, within GFF4603 at 244.863 kb on - strand, within GFF4603 at 244.863 kb on - strand, within GFF4603 at 244.863 kb on - strand, within GFF4603 at 244.863 kb on - strand, within GFF4603 at 244.863 kb on - strand, within GFF4603 at 244.863 kb on - strand, within GFF4603 at 244.863 kb on - strand, within GFF4603 at 244.863 kb on - strand, within GFF4603 at 244.863 kb on - strand, within GFF4603 at 244.863 kb on - strand, within GFF4603
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 242,415 + GFF4600 0.30 -0.8 242,415 + GFF4600 0.30 -0.3 242,415 + GFF4600 0.30 -0.1 242,416 - GFF4600 0.30 -0.1 242,416 - GFF4600 0.30 +0.5 242,466 + GFF4600 0.34 +1.0 242,466 + GFF4600 0.34 -0.5 242,466 + GFF4600 0.34 -0.2 242,466 + GFF4600 0.34 -1.3 242,466 + GFF4600 0.34 -0.3 242,466 + GFF4600 0.34 -1.1 242,466 + GFF4600 0.34 +0.8 242,466 + GFF4600 0.34 -0.0 242,467 - GFF4600 0.34 +0.3 242,467 - GFF4600 0.34 -0.2 242,467 - GFF4600 0.34 -0.5 242,622 + GFF4600 0.47 -0.2 242,622 + GFF4600 0.47 -0.2 242,623 - GFF4600 0.47 +0.6 242,623 - GFF4600 0.47 -0.8 242,623 - GFF4600 0.47 -0.1 242,623 - GFF4600 0.47 -0.2 242,733 + GFF4600 0.57 -0.2 242,734 - GFF4600 0.57 -0.1 242,734 - GFF4600 0.57 +0.4 242,922 + GFF4600 0.73 +0.3 242,923 - GFF4600 0.73 +0.1 243,230 - +0.3 243,254 + +0.4 243,255 - -0.0 243,334 + -0.3 243,334 + -0.1 243,334 + -0.3 243,334 + -1.1 243,335 - -0.8 243,335 - -0.7 243,335 - -0.7 243,681 + GFF4601 0.42 +0.7 243,777 + GFF4601 0.54 -1.0 243,777 + GFF4601 0.54 -0.1 243,777 + GFF4601 0.54 -1.1 243,778 - GFF4601 0.54 -0.5 243,778 - GFF4601 0.54 -0.6 243,778 - GFF4601 0.54 -0.2 243,778 - GFF4601 0.54 +0.2 243,778 - GFF4601 0.54 +0.4 244,035 + GFF4601 0.88 +0.4 244,035 + GFF4601 0.88 +0.2 244,035 + GFF4601 0.88 +0.8 244,035 + GFF4601 0.88 +0.7 244,036 - GFF4601 0.88 +2.3 244,036 - GFF4601 0.88 -0.7 244,141 + -0.9 244,141 + -0.5 244,142 - +1.0 244,142 - -0.7 244,419 + GFF4602 0.43 -0.3 244,419 + GFF4602 0.43 +0.4 244,420 - GFF4602 0.43 +0.9 244,434 + GFF4602 0.45 +1.0 244,435 - GFF4602 0.46 +0.4 244,435 - GFF4602 0.46 -1.1 244,435 - GFF4602 0.46 -0.9 244,435 - GFF4602 0.46 +0.3 244,575 + GFF4602 0.69 +0.1 244,575 + GFF4602 0.69 +0.3 244,575 + GFF4602 0.69 +0.3 244,575 + GFF4602 0.69 +0.0 244,575 + GFF4602 0.69 +0.2 244,575 + GFF4602 0.69 +0.9 244,576 - GFF4602 0.69 -1.0 244,576 - GFF4602 0.69 +0.5 244,576 - GFF4602 0.69 -1.2 244,576 - GFF4602 0.69 +0.5 244,576 - GFF4602 0.69 +0.4 244,710 + +0.4 244,711 - -0.4 244,711 - +2.3 244,738 - -0.5 244,862 + GFF4603 0.10 +0.6 244,862 + GFF4603 0.10 -0.4 244,862 + GFF4603 0.10 +1.3 244,863 - GFF4603 0.10 +0.0 244,863 - GFF4603 0.10 -0.4 244,863 - GFF4603 0.10 +0.1 244,863 - GFF4603 0.10 -0.3 244,863 - GFF4603 0.10 -0.4 244,863 - GFF4603 0.10 -0.5 244,863 - GFF4603 0.10 +0.2 244,863 - GFF4603 0.10 +0.3 244,863 - GFF4603 0.10 -0.4 244,863 - GFF4603 0.10 -0.3
Or see this region's nucleotide sequence