Strain Fitness in Variovorax sp. SCN45 around GFF4581

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4580 and GFF4581 overlap by 23 nucleotidesGFF4581 and GFF4582 are separated by 352 nucleotidesGFF4582 and GFF4583 overlap by 4 nucleotides GFF4580 - hypothetical protein, at 220,848 to 222,875 GFF4580 GFF4581 - hypothetical protein, at 222,853 to 223,146 GFF4581 GFF4582 - TRAP-type C4-dicarboxylate transport system, small permease component, at 223,499 to 224,098 GFF4582 GFF4583 - TRAP-type C4-dicarboxylate transport system, large permease component, at 224,095 to 225,393 GFF4583 Position (kb) 222 223 224Strain fitness (log2 ratio) -3 -2 -1 0 1at 222.072 kb on - strand, within GFF4580at 222.113 kb on + strand, within GFF4580at 222.113 kb on + strand, within GFF4580at 222.113 kb on + strand, within GFF4580at 222.113 kb on + strand, within GFF4580at 222.114 kb on - strand, within GFF4580at 222.139 kb on + strand, within GFF4580at 222.140 kb on - strand, within GFF4580at 222.140 kb on - strand, within GFF4580at 222.147 kb on + strand, within GFF4580at 222.147 kb on + strand, within GFF4580at 222.147 kb on + strand, within GFF4580at 222.148 kb on - strand, within GFF4580at 222.154 kb on + strand, within GFF4580at 222.155 kb on - strand, within GFF4580at 222.223 kb on + strand, within GFF4580at 222.224 kb on - strand, within GFF4580at 222.239 kb on - strand, within GFF4580at 222.239 kb on - strand, within GFF4580at 222.239 kb on - strand, within GFF4580at 222.354 kb on + strand, within GFF4580at 222.360 kb on + strand, within GFF4580at 222.361 kb on - strand, within GFF4580at 222.361 kb on - strand, within GFF4580at 222.405 kb on + strand, within GFF4580at 222.406 kb on - strand, within GFF4580at 222.409 kb on - strand, within GFF4580at 222.409 kb on - strand, within GFF4580at 222.422 kb on + strand, within GFF4580at 222.628 kb on + strand, within GFF4580at 222.628 kb on + strand, within GFF4580at 222.629 kb on - strand, within GFF4580at 222.675 kb on + strandat 222.682 kb on + strandat 222.683 kb on - strandat 222.683 kb on - strandat 222.687 kb on - strandat 222.790 kb on - strandat 222.790 kb on - strandat 222.860 kb on + strandat 222.860 kb on + strandat 222.861 kb on - strandat 222.861 kb on - strandat 222.910 kb on + strand, within GFF4581at 222.911 kb on - strand, within GFF4581at 223.040 kb on - strand, within GFF4581at 223.040 kb on - strand, within GFF4581at 223.041 kb on + strand, within GFF4581at 223.042 kb on - strand, within GFF4581at 223.042 kb on - strand, within GFF4581at 223.127 kb on - strandat 223.135 kb on + strandat 223.135 kb on + strandat 223.135 kb on + strandat 223.368 kb on + strandat 223.384 kb on - strandat 223.406 kb on + strandat 223.406 kb on + strandat 223.406 kb on + strandat 223.406 kb on + strandat 223.406 kb on + strandat 223.406 kb on + strandat 223.406 kb on + strandat 223.406 kb on + strandat 223.407 kb on - strandat 223.407 kb on - strandat 223.407 kb on - strandat 223.407 kb on - strandat 223.407 kb on - strandat 223.437 kb on + strandat 223.489 kb on - strandat 223.593 kb on + strand, within GFF4582at 223.594 kb on - strand, within GFF4582at 223.594 kb on - strand, within GFF4582at 223.670 kb on + strand, within GFF4582at 223.787 kb on + strand, within GFF4582at 223.787 kb on + strand, within GFF4582at 223.955 kb on + strand, within GFF4582at 224.004 kb on + strand, within GFF4582at 224.005 kb on - strand, within GFF4582at 224.005 kb on - strand, within GFF4582at 224.040 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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222,072 - GFF4580 0.60 -0.6
222,113 + GFF4580 0.62 -0.7
222,113 + GFF4580 0.62 -0.2
222,113 + GFF4580 0.62 -0.6
222,113 + GFF4580 0.62 -0.2
222,114 - GFF4580 0.62 +0.9
222,139 + GFF4580 0.64 +0.1
222,140 - GFF4580 0.64 -0.6
222,140 - GFF4580 0.64 -0.3
222,147 + GFF4580 0.64 -0.3
222,147 + GFF4580 0.64 -0.8
222,147 + GFF4580 0.64 -0.0
222,148 - GFF4580 0.64 -1.3
222,154 + GFF4580 0.64 +0.7
222,155 - GFF4580 0.64 +0.4
222,223 + GFF4580 0.68 -0.3
222,224 - GFF4580 0.68 -0.2
222,239 - GFF4580 0.69 -0.5
222,239 - GFF4580 0.69 +0.1
222,239 - GFF4580 0.69 -0.7
222,354 + GFF4580 0.74 -3.0
222,360 + GFF4580 0.75 -0.7
222,361 - GFF4580 0.75 -0.1
222,361 - GFF4580 0.75 -0.2
222,405 + GFF4580 0.77 +0.2
222,406 - GFF4580 0.77 -0.6
222,409 - GFF4580 0.77 +0.4
222,409 - GFF4580 0.77 -0.7
222,422 + GFF4580 0.78 -0.6
222,628 + GFF4580 0.88 +0.7
222,628 + GFF4580 0.88 +1.3
222,629 - GFF4580 0.88 -0.8
222,675 + -0.4
222,682 + +0.2
222,683 - -0.3
222,683 - -0.2
222,687 - +1.3
222,790 - -0.3
222,790 - +0.5
222,860 + -0.8
222,860 + -0.2
222,861 - -0.3
222,861 - -2.4
222,910 + GFF4581 0.19 +1.1
222,911 - GFF4581 0.20 +0.4
223,040 - GFF4581 0.64 -0.3
223,040 - GFF4581 0.64 +1.5
223,041 + GFF4581 0.64 +0.4
223,042 - GFF4581 0.64 -0.8
223,042 - GFF4581 0.64 -0.0
223,127 - -0.6
223,135 + -0.3
223,135 + -0.1
223,135 + -0.7
223,368 + +0.1
223,384 - +0.1
223,406 + -0.6
223,406 + +0.2
223,406 + -0.2
223,406 + -1.8
223,406 + -2.1
223,406 + +0.4
223,406 + -0.1
223,406 + +0.4
223,407 - -0.0
223,407 - +0.8
223,407 - +0.2
223,407 - +1.2
223,407 - -0.4
223,437 + -0.8
223,489 - -2.1
223,593 + GFF4582 0.16 -2.2
223,594 - GFF4582 0.16 -0.4
223,594 - GFF4582 0.16 +0.3
223,670 + GFF4582 0.28 +0.0
223,787 + GFF4582 0.48 -0.4
223,787 + GFF4582 0.48 +0.7
223,955 + GFF4582 0.76 -0.1
224,004 + GFF4582 0.84 +0.0
224,005 - GFF4582 0.84 -0.2
224,005 - GFF4582 0.84 -0.1
224,040 - -0.8

Or see this region's nucleotide sequence