Strain Fitness in Variovorax sp. SCN45 around GFF458

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF457 and GFF458 are separated by 25 nucleotidesGFF458 and GFF459 are separated by 61 nucleotides GFF457 - Nitrilase (EC 3.5.5.7), at 495,012 to 496,016 GFF457 GFF458 - Aldoxime dehydratase, at 496,042 to 497,097 GFF458 GFF459 - Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily / DUF3471 domain, at 497,159 to 498,604 GFF459 Position (kb) 496 497 498Strain fitness (log2 ratio) -1 0 1at 495.174 kb on + strand, within GFF457at 495.348 kb on + strand, within GFF457at 495.348 kb on + strand, within GFF457at 495.348 kb on + strand, within GFF457at 495.349 kb on - strand, within GFF457at 495.534 kb on + strand, within GFF457at 495.534 kb on + strand, within GFF457at 495.535 kb on - strand, within GFF457at 495.535 kb on - strand, within GFF457at 495.535 kb on - strand, within GFF457at 495.535 kb on - strand, within GFF457at 495.543 kb on + strand, within GFF457at 495.543 kb on + strand, within GFF457at 495.544 kb on - strand, within GFF457at 495.595 kb on - strand, within GFF457at 495.609 kb on + strand, within GFF457at 495.609 kb on + strand, within GFF457at 495.610 kb on - strand, within GFF457at 495.610 kb on - strand, within GFF457at 495.610 kb on - strand, within GFF457at 495.610 kb on - strand, within GFF457at 495.651 kb on + strand, within GFF457at 495.651 kb on + strand, within GFF457at 495.651 kb on + strand, within GFF457at 495.651 kb on + strand, within GFF457at 495.651 kb on + strand, within GFF457at 495.651 kb on + strand, within GFF457at 495.651 kb on + strand, within GFF457at 495.652 kb on - strand, within GFF457at 495.652 kb on - strand, within GFF457at 495.652 kb on - strand, within GFF457at 495.652 kb on - strand, within GFF457at 495.652 kb on - strand, within GFF457at 495.679 kb on + strand, within GFF457at 495.780 kb on + strand, within GFF457at 495.780 kb on + strand, within GFF457at 495.781 kb on - strand, within GFF457at 495.781 kb on - strand, within GFF457at 495.781 kb on - strand, within GFF457at 495.781 kb on - strand, within GFF457at 495.903 kb on + strand, within GFF457at 495.904 kb on - strand, within GFF457at 495.904 kb on - strand, within GFF457at 496.108 kb on + strandat 496.109 kb on - strandat 496.109 kb on - strandat 496.291 kb on + strand, within GFF458at 496.291 kb on + strand, within GFF458at 496.292 kb on - strand, within GFF458at 496.333 kb on + strand, within GFF458at 496.412 kb on + strand, within GFF458at 496.412 kb on + strand, within GFF458at 496.413 kb on - strand, within GFF458at 496.552 kb on + strand, within GFF458at 496.742 kb on - strand, within GFF458at 496.742 kb on - strand, within GFF458at 496.742 kb on - strand, within GFF458at 496.742 kb on - strand, within GFF458at 496.817 kb on - strand, within GFF458at 496.828 kb on + strand, within GFF458at 496.966 kb on + strand, within GFF458at 496.966 kb on + strand, within GFF458at 497.006 kb on - strandat 497.006 kb on - strandat 497.044 kb on + strandat 497.045 kb on - strandat 497.045 kb on - strandat 497.045 kb on - strandat 497.045 kb on - strandat 497.050 kb on + strandat 497.050 kb on + strandat 497.051 kb on - strandat 497.051 kb on - strandat 497.051 kb on - strandat 497.051 kb on - strandat 497.121 kb on + strandat 497.121 kb on + strandat 497.121 kb on + strandat 497.121 kb on + strandat 497.122 kb on - strandat 497.136 kb on + strandat 497.267 kb on + strandat 497.267 kb on + strandat 497.593 kb on + strand, within GFF459at 497.593 kb on + strand, within GFF459at 497.593 kb on + strand, within GFF459at 497.593 kb on + strand, within GFF459at 497.618 kb on + strand, within GFF459at 497.618 kb on + strand, within GFF459at 497.618 kb on + strand, within GFF459at 497.618 kb on + strand, within GFF459at 497.618 kb on + strand, within GFF459at 497.619 kb on - strand, within GFF459at 497.619 kb on - strand, within GFF459at 498.041 kb on + strand, within GFF459at 498.041 kb on + strand, within GFF459at 498.042 kb on - strand, within GFF459

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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495,174 + GFF457 0.16 -0.0
495,348 + GFF457 0.33 -0.3
495,348 + GFF457 0.33 -0.4
495,348 + GFF457 0.33 -0.7
495,349 - GFF457 0.34 -1.1
495,534 + GFF457 0.52 +0.4
495,534 + GFF457 0.52 +0.0
495,535 - GFF457 0.52 -0.2
495,535 - GFF457 0.52 +1.2
495,535 - GFF457 0.52 -0.2
495,535 - GFF457 0.52 -0.1
495,543 + GFF457 0.53 +0.1
495,543 + GFF457 0.53 -1.2
495,544 - GFF457 0.53 -0.2
495,595 - GFF457 0.58 -0.3
495,609 + GFF457 0.59 -0.4
495,609 + GFF457 0.59 +0.8
495,610 - GFF457 0.60 +0.1
495,610 - GFF457 0.60 -0.9
495,610 - GFF457 0.60 -0.1
495,610 - GFF457 0.60 -0.8
495,651 + GFF457 0.64 -0.8
495,651 + GFF457 0.64 -1.0
495,651 + GFF457 0.64 -1.2
495,651 + GFF457 0.64 +0.4
495,651 + GFF457 0.64 -0.4
495,651 + GFF457 0.64 -1.0
495,651 + GFF457 0.64 -0.6
495,652 - GFF457 0.64 -0.6
495,652 - GFF457 0.64 +0.6
495,652 - GFF457 0.64 -0.6
495,652 - GFF457 0.64 -0.5
495,652 - GFF457 0.64 +0.1
495,679 + GFF457 0.66 -0.5
495,780 + GFF457 0.76 -0.2
495,780 + GFF457 0.76 -0.7
495,781 - GFF457 0.77 -0.6
495,781 - GFF457 0.77 -0.5
495,781 - GFF457 0.77 -0.2
495,781 - GFF457 0.77 -0.4
495,903 + GFF457 0.89 +0.3
495,904 - GFF457 0.89 -0.6
495,904 - GFF457 0.89 -1.5
496,108 + -0.3
496,109 - +0.5
496,109 - +1.0
496,291 + GFF458 0.24 +0.4
496,291 + GFF458 0.24 -1.2
496,292 - GFF458 0.24 -1.4
496,333 + GFF458 0.28 -1.0
496,412 + GFF458 0.35 -0.6
496,412 + GFF458 0.35 -0.5
496,413 - GFF458 0.35 +0.6
496,552 + GFF458 0.48 -0.8
496,742 - GFF458 0.66 -0.4
496,742 - GFF458 0.66 -1.1
496,742 - GFF458 0.66 -0.3
496,742 - GFF458 0.66 +0.8
496,817 - GFF458 0.73 -0.6
496,828 + GFF458 0.74 +0.6
496,966 + GFF458 0.88 +1.0
496,966 + GFF458 0.88 -0.2
497,006 - -0.8
497,006 - -0.0
497,044 + +0.2
497,045 - +0.3
497,045 - -0.5
497,045 - +0.8
497,045 - -0.6
497,050 + -0.1
497,050 + -0.6
497,051 - +1.0
497,051 - -0.1
497,051 - -0.4
497,051 - -0.8
497,121 + -0.5
497,121 + +0.6
497,121 + -0.9
497,121 + -1.4
497,122 - -1.1
497,136 + -0.8
497,267 + +0.3
497,267 + -0.1
497,593 + GFF459 0.30 +1.0
497,593 + GFF459 0.30 +0.1
497,593 + GFF459 0.30 +0.2
497,593 + GFF459 0.30 +0.8
497,618 + GFF459 0.32 -0.9
497,618 + GFF459 0.32 +0.1
497,618 + GFF459 0.32 +0.3
497,618 + GFF459 0.32 -0.0
497,618 + GFF459 0.32 -0.2
497,619 - GFF459 0.32 -0.2
497,619 - GFF459 0.32 +0.2
498,041 + GFF459 0.61 +0.6
498,041 + GFF459 0.61 -0.3
498,042 - GFF459 0.61 +0.1

Or see this region's nucleotide sequence