Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4570 and GFF4571 are separated by 12 nucleotides GFF4571 and GFF4572 overlap by 4 nucleotides GFF4572 and GFF4573 are separated by 61 nucleotides
GFF4570 - Acyl-CoA dehydrogenase, long-chain specific (EC 1.3.8.8), at 207,887 to 209,095
GFF4570
GFF4571 - Acyl-CoA dehydrogenase family protein, at 209,108 to 210,250
GFF4571
GFF4572 - Enoyl-CoA hydratase (EC 4.2.1.17), at 210,247 to 211,074
GFF4572
GFF4573 - L-carnitine dehydratase/bile acid-inducible protein F, at 211,136 to 212,344
GFF4573
Position (kb) 209
210
211 Strain fitness (log2 ratio) -2
-1
0
1 at 208.196 kb on + strand, within GFF4570 at 208.196 kb on + strand, within GFF4570 at 208.197 kb on - strand, within GFF4570 at 208.269 kb on - strand, within GFF4570 at 208.349 kb on + strand, within GFF4570 at 208.349 kb on + strand, within GFF4570 at 208.349 kb on + strand, within GFF4570 at 208.350 kb on - strand, within GFF4570 at 208.350 kb on - strand, within GFF4570 at 208.350 kb on - strand, within GFF4570 at 208.350 kb on - strand, within GFF4570 at 208.350 kb on - strand, within GFF4570 at 208.350 kb on - strand, within GFF4570 at 208.350 kb on - strand, within GFF4570 at 208.350 kb on - strand, within GFF4570 at 208.507 kb on + strand, within GFF4570 at 208.507 kb on + strand, within GFF4570 at 208.508 kb on - strand, within GFF4570 at 208.613 kb on + strand, within GFF4570 at 208.614 kb on - strand, within GFF4570 at 208.614 kb on - strand, within GFF4570 at 208.614 kb on - strand, within GFF4570 at 208.625 kb on + strand, within GFF4570 at 208.626 kb on - strand, within GFF4570 at 208.626 kb on - strand, within GFF4570 at 208.626 kb on - strand, within GFF4570 at 208.919 kb on + strand, within GFF4570 at 208.919 kb on + strand, within GFF4570 at 208.920 kb on - strand, within GFF4570 at 208.920 kb on - strand, within GFF4570 at 208.920 kb on - strand, within GFF4570 at 208.958 kb on + strand, within GFF4570 at 208.958 kb on + strand, within GFF4570 at 208.959 kb on - strand, within GFF4570 at 208.959 kb on - strand, within GFF4570 at 208.959 kb on - strand, within GFF4570 at 208.959 kb on - strand, within GFF4570 at 208.959 kb on - strand, within GFF4570 at 208.985 kb on + strand at 208.985 kb on + strand at 208.986 kb on - strand at 208.986 kb on - strand at 209.094 kb on - strand at 209.177 kb on + strand at 209.177 kb on + strand at 209.177 kb on + strand at 209.177 kb on + strand at 209.177 kb on + strand at 209.178 kb on - strand at 209.495 kb on + strand, within GFF4571 at 209.496 kb on - strand, within GFF4571 at 209.572 kb on - strand, within GFF4571 at 209.885 kb on + strand, within GFF4571 at 209.886 kb on - strand, within GFF4571 at 210.155 kb on + strand at 210.155 kb on + strand at 210.218 kb on + strand at 210.218 kb on + strand at 210.218 kb on + strand at 210.219 kb on - strand at 210.219 kb on - strand at 210.219 kb on - strand at 210.219 kb on - strand at 210.352 kb on + strand, within GFF4572 at 210.352 kb on + strand, within GFF4572 at 210.353 kb on - strand, within GFF4572 at 210.649 kb on + strand, within GFF4572 at 210.649 kb on + strand, within GFF4572 at 210.650 kb on - strand, within GFF4572 at 210.650 kb on - strand, within GFF4572 at 210.650 kb on - strand, within GFF4572 at 210.650 kb on - strand, within GFF4572 at 210.661 kb on + strand, within GFF4572 at 210.662 kb on - strand, within GFF4572 at 210.662 kb on - strand, within GFF4572 at 210.662 kb on - strand, within GFF4572 at 210.662 kb on - strand, within GFF4572
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 208,196 + GFF4570 0.26 -0.0 208,196 + GFF4570 0.26 +1.0 208,197 - GFF4570 0.26 -0.6 208,269 - GFF4570 0.32 -1.6 208,349 + GFF4570 0.38 +0.7 208,349 + GFF4570 0.38 -0.3 208,349 + GFF4570 0.38 -1.0 208,350 - GFF4570 0.38 +1.0 208,350 - GFF4570 0.38 -0.7 208,350 - GFF4570 0.38 -0.7 208,350 - GFF4570 0.38 -1.8 208,350 - GFF4570 0.38 +0.9 208,350 - GFF4570 0.38 -1.2 208,350 - GFF4570 0.38 -1.1 208,350 - GFF4570 0.38 -0.7 208,507 + GFF4570 0.51 -0.2 208,507 + GFF4570 0.51 -0.7 208,508 - GFF4570 0.51 +0.0 208,613 + GFF4570 0.60 -2.0 208,614 - GFF4570 0.60 -0.3 208,614 - GFF4570 0.60 +0.0 208,614 - GFF4570 0.60 -0.2 208,625 + GFF4570 0.61 +1.3 208,626 - GFF4570 0.61 -0.1 208,626 - GFF4570 0.61 -0.1 208,626 - GFF4570 0.61 -0.4 208,919 + GFF4570 0.85 -0.3 208,919 + GFF4570 0.85 -0.5 208,920 - GFF4570 0.85 -1.1 208,920 - GFF4570 0.85 +0.1 208,920 - GFF4570 0.85 -0.6 208,958 + GFF4570 0.89 +0.9 208,958 + GFF4570 0.89 +0.7 208,959 - GFF4570 0.89 -0.0 208,959 - GFF4570 0.89 -0.2 208,959 - GFF4570 0.89 +0.7 208,959 - GFF4570 0.89 -1.0 208,959 - GFF4570 0.89 -0.3 208,985 + -0.3 208,985 + +1.2 208,986 - +0.0 208,986 - -0.4 209,094 - +0.2 209,177 + -0.2 209,177 + -0.7 209,177 + -0.1 209,177 + +0.2 209,177 + -0.1 209,178 - -0.4 209,495 + GFF4571 0.34 +0.2 209,496 - GFF4571 0.34 +0.3 209,572 - GFF4571 0.41 -0.2 209,885 + GFF4571 0.68 +0.4 209,886 - GFF4571 0.68 -0.3 210,155 + -0.9 210,155 + +1.2 210,218 + -0.8 210,218 + -0.1 210,218 + -0.2 210,219 - -0.2 210,219 - +0.3 210,219 - -0.2 210,219 - -0.9 210,352 + GFF4572 0.13 -0.9 210,352 + GFF4572 0.13 +0.4 210,353 - GFF4572 0.13 -0.7 210,649 + GFF4572 0.49 -2.3 210,649 + GFF4572 0.49 +0.2 210,650 - GFF4572 0.49 -1.0 210,650 - GFF4572 0.49 -0.4 210,650 - GFF4572 0.49 +0.9 210,650 - GFF4572 0.49 +0.4 210,661 + GFF4572 0.50 -0.1 210,662 - GFF4572 0.50 -0.3 210,662 - GFF4572 0.50 -0.3 210,662 - GFF4572 0.50 +0.1 210,662 - GFF4572 0.50 +0.4
Or see this region's nucleotide sequence