Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF446 and GFF447 overlap by 4 nucleotides GFF447 and GFF448 overlap by 4 nucleotides GFF448 and GFF449 overlap by 17 nucleotides
GFF446 - Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1), at 484,125 to 485,150
GFF446
GFF447 - Vitamin B12 ABC transporter, substrate-binding protein BtuF, at 485,147 to 486,019
GFF447
GFF448 - Adenosylcobinamide kinase (EC 2.7.1.156) / Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62), at 486,016 to 486,621
GFF448
GFF449 - Cobyrinic acid a,c-diamide synthetase (EC 6.3.5.11), at 486,605 to 488,026
GFF449
Position (kb) 486
487 Strain fitness (log2 ratio) -2
-1
0
1 at 485.367 kb on + strand, within GFF447 at 485.367 kb on + strand, within GFF447 at 485.367 kb on + strand, within GFF447 at 485.368 kb on - strand, within GFF447 at 485.368 kb on - strand, within GFF447 at 485.368 kb on - strand, within GFF447 at 485.368 kb on - strand, within GFF447 at 485.497 kb on - strand, within GFF447 at 485.497 kb on - strand, within GFF447 at 486.464 kb on + strand, within GFF448 at 486.464 kb on + strand, within GFF448 at 486.464 kb on + strand, within GFF448 at 486.465 kb on - strand, within GFF448 at 486.465 kb on - strand, within GFF448 at 486.465 kb on - strand, within GFF448 at 486.465 kb on - strand, within GFF448 at 486.465 kb on - strand, within GFF448 at 486.606 kb on + strand at 486.606 kb on + strand at 486.607 kb on - strand at 486.607 kb on - strand at 486.607 kb on - strand at 486.607 kb on - strand at 486.607 kb on - strand at 486.695 kb on + strand at 486.699 kb on + strand at 486.699 kb on + strand at 486.699 kb on + strand at 486.700 kb on - strand at 486.700 kb on - strand at 486.726 kb on + strand at 486.726 kb on + strand at 486.726 kb on + strand at 486.726 kb on + strand at 486.726 kb on + strand at 486.726 kb on + strand at 486.726 kb on + strand at 486.727 kb on - strand at 486.727 kb on - strand at 486.727 kb on - strand at 486.727 kb on - strand at 486.727 kb on - strand at 486.727 kb on - strand at 486.819 kb on + strand, within GFF449 at 486.819 kb on + strand, within GFF449 at 486.820 kb on - strand, within GFF449 at 486.820 kb on - strand, within GFF449 at 486.820 kb on - strand, within GFF449 at 486.820 kb on - strand, within GFF449 at 487.210 kb on - strand, within GFF449 at 487.585 kb on - strand, within GFF449
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 485,367 + GFF447 0.25 +0.3 485,367 + GFF447 0.25 -0.1 485,367 + GFF447 0.25 +0.7 485,368 - GFF447 0.25 +0.5 485,368 - GFF447 0.25 -1.6 485,368 - GFF447 0.25 +0.5 485,368 - GFF447 0.25 -0.6 485,497 - GFF447 0.40 -0.9 485,497 - GFF447 0.40 -0.5 486,464 + GFF448 0.74 +1.2 486,464 + GFF448 0.74 +0.2 486,464 + GFF448 0.74 +1.6 486,465 - GFF448 0.74 -0.2 486,465 - GFF448 0.74 -0.9 486,465 - GFF448 0.74 +0.7 486,465 - GFF448 0.74 -0.0 486,465 - GFF448 0.74 +1.6 486,606 + -0.6 486,606 + +0.6 486,607 - -0.7 486,607 - +0.6 486,607 - +1.0 486,607 - -1.9 486,607 - +0.4 486,695 + +1.0 486,699 + -1.9 486,699 + -0.0 486,699 + +0.1 486,700 - +0.9 486,700 - +0.1 486,726 + -1.2 486,726 + +0.2 486,726 + -2.2 486,726 + +0.3 486,726 + +0.5 486,726 + -0.1 486,726 + +0.2 486,727 - -1.1 486,727 - +0.3 486,727 - +0.6 486,727 - +0.6 486,727 - -0.2 486,727 - +0.9 486,819 + GFF449 0.15 -0.2 486,819 + GFF449 0.15 -1.0 486,820 - GFF449 0.15 +0.2 486,820 - GFF449 0.15 +0.1 486,820 - GFF449 0.15 -1.2 486,820 - GFF449 0.15 -0.2 487,210 - GFF449 0.43 +0.4 487,585 - GFF449 0.69 +0.3
Or see this region's nucleotide sequence