Strain Fitness in Variovorax sp. SCN45 around GFF4398

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
31,801	+		GFF4397	0.67	-1.2
31,801	+		GFF4397	0.67	-0.1
31,801	+		GFF4397	0.67	+2.0
31,801	+		GFF4397	0.67	+0.4
31,801	+		GFF4397	0.67	-1.2
31,801	+		GFF4397	0.67	-0.8
31,801	+		GFF4397	0.67	+0.1
31,801	+		GFF4397	0.67	-1.7
31,802	-		GFF4397	0.67	-0.4
31,802	-		GFF4397	0.67	-0.1
31,802	-		GFF4397	0.67	+0.4
31,802	-		GFF4397	0.67	+0.4
31,802	-		GFF4397	0.67	-0.8
31,918	+		GFF4397	0.71	-0.7
31,918	+		GFF4397	0.71	-1.3
31,918	+		GFF4397	0.71	+0.7
31,918	+		GFF4397	0.71	-0.9
31,918	+		GFF4397	0.71	+0.4
31,919	-		GFF4397	0.71	-0.6
31,919	-		GFF4397	0.71	+0.4
31,919	-		GFF4397	0.71	-0.6
31,919	-		GFF4397	0.71	+0.4
31,919	-		GFF4397	0.71	+0.5
31,919	-		GFF4397	0.71	-0.5
31,919	-		GFF4397	0.71	+0.7
31,939	+		GFF4397	0.72	+0.6
31,939	+		GFF4397	0.72	-0.0
31,939	+		GFF4397	0.72	-0.2
31,939	+		GFF4397	0.72	+0.3
31,939	+		GFF4397	0.72	-0.0
31,939	+		GFF4397	0.72	-0.4
31,939	+		GFF4397	0.72	+0.2
31,939	+		GFF4397	0.72	-0.6
31,939	+		GFF4397	0.72	-0.6
31,939	+		GFF4397	0.72	-0.5
31,939	+		GFF4397	0.72	-0.7
31,939	+		GFF4397	0.72	-0.4
31,939	+		GFF4397	0.72	+0.1
31,940	-		GFF4397	0.72	-0.8
31,940	-		GFF4397	0.72	-0.2
31,940	-		GFF4397	0.72	-1.6
31,940	-		GFF4397	0.72	-0.2
31,940	-		GFF4397	0.72	+0.0
31,940	-		GFF4397	0.72	+1.0
31,940	-		GFF4397	0.72	-0.6
31,940	-		GFF4397	0.72	-0.6
31,940	-		GFF4397	0.72	-0.4
31,940	-		GFF4397	0.72	-0.1
31,940	-		GFF4397	0.72	+1.2
32,047	+		GFF4397	0.76	+0.4
32,047	+		GFF4397	0.76	+1.7
32,047	+		GFF4397	0.76	-0.7
32,047	+		GFF4397	0.76	-0.0
32,047	+		GFF4397	0.76	+1.4
32,047	+		GFF4397	0.76	-0.8
32,048	-		GFF4397	0.76	+0.9
32,048	-		GFF4397	0.76	+0.1
32,048	-		GFF4397	0.76	-0.2
32,048	-		GFF4397	0.76	+1.2
32,048	-		GFF4397	0.76	-2.4
32,048	-		GFF4397	0.76	-0.6
32,048	-		GFF4397	0.76	-0.8
32,048	-		GFF4397	0.76	-0.8
32,048	-		GFF4397	0.76	-1.8
32,110	+		GFF4397	0.78	-1.0
32,110	+		GFF4397	0.78	+0.4
32,110	+		GFF4397	0.78	+0.5
32,110	+		GFF4397	0.78	+0.7
32,111	-		GFF4397	0.78	+0.3
32,111	-		GFF4397	0.78	-0.4
32,111	-		GFF4397	0.78	+0.7
32,111	-		GFF4397	0.78	-0.5
32,111	-		GFF4397	0.78	-0.5
32,111	-		GFF4397	0.78	-0.2
32,188	+		GFF4397	0.81	+0.0
32,188	+		GFF4397	0.81	-0.4
32,188	+		GFF4397	0.81	-1.3
32,188	+		GFF4397	0.81	+0.3
32,188	+		GFF4397	0.81	-0.2
32,188	+		GFF4397	0.81	-1.0
32,188	+		GFF4397	0.81	+0.1
32,188	+		GFF4397	0.81	-1.0
32,189	-		GFF4397	0.81	-0.8
32,189	-		GFF4397	0.81	-0.5
32,189	-		GFF4397	0.81	-0.3
32,189	-		GFF4397	0.81	-1.1
32,189	-		GFF4397	0.81	-0.8
32,189	-		GFF4397	0.81	+0.6
32,189	-		GFF4397	0.81	+1.2
32,189	-		GFF4397	0.81	+1.2
32,189	-		GFF4397	0.81	-0.3
32,189	-		GFF4397	0.81	-0.5
32,189	-		GFF4397	0.81	-1.8
32,189	-		GFF4397	0.81	-0.4
32,189	-		GFF4397	0.81	-0.0
32,227	+		GFF4397	0.83	-0.5
32,227	+		GFF4397	0.83	+1.2
32,228	-		GFF4397	0.83	-1.0
32,275	+		GFF4397	0.84	-1.3
32,275	+		GFF4397	0.84	-0.1
32,275	+		GFF4397	0.84	-0.1
32,275	+		GFF4397	0.84	+0.9
32,275	+		GFF4397	0.84	+0.2
32,275	+		GFF4397	0.84	+0.3
32,275	+		GFF4397	0.84	+0.4
32,275	+		GFF4397	0.84	+0.7
32,276	-		GFF4397	0.84	+0.2
32,276	-		GFF4397	0.84	-0.0
32,276	-		GFF4397	0.84	-0.3
32,276	-		GFF4397	0.84	-0.8
32,276	-		GFF4397	0.84	-0.8
32,276	-		GFF4397	0.84	+0.2
32,276	-		GFF4397	0.84	-0.3
32,276	-		GFF4397	0.84	-0.7
32,662	+				+0.0
32,662	+				+0.3
32,662	+				-0.4
32,662	+				+0.2
32,662	+				+0.6
32,662	+				+0.4
32,663	-				-0.3
32,663	-				+0.1
32,663	-				-0.1
32,663	-				-0.2
32,663	-				+1.7
32,663	-				-0.8
32,663	-				-0.3
32,663	-				+0.1
32,663	-				+0.7
32,663	-				-0.4
32,663	-				-0.3
32,663	-				-0.6
32,663	-				-0.3
32,663	-				+1.4
32,663	-				-0.4
32,663	-				-1.3
32,663	-				-0.7
32,739	+				-0.7
32,739	+				-0.6
32,740	-				+0.4
32,740	-				+0.5
32,767	+				-0.3
32,768	+				+0.7
32,768	+				-0.0
32,768	+				-0.2
32,768	+				-1.1
32,768	+				-0.2
32,768	+				-0.8
32,768	+				+0.2
32,768	+				+0.7
32,768	+				-0.0
32,768	+				-0.5
32,768	+				-1.2
32,768	+				-1.3
32,768	+				+1.2
32,768	+				+0.2
32,768	+				-0.3
32,768	+				+0.1
32,768	+				-0.5
32,768	+				+0.0
32,768	+				+1.4
32,768	+				+1.4
32,768	+				-0.2
32,768	+				-0.7
32,768	+				+0.6
32,768	+				+0.3
32,768	+				-1.1
32,768	+				-0.0
32,768	+				-0.9
32,768	+				+0.8
32,768	+				+0.7
32,768	+				-0.4
32,768	+				-1.2
32,768	+				-0.5
32,768	+				-0.6
32,768	+				-0.7
32,768	+				+0.2
32,768	+				-1.7
32,768	+				+0.2
32,768	+				+0.7
32,768	+				+1.0
32,768	+				+1.3
32,768	+				-0.8
32,768	+				-0.6
32,768	+				+0.8
32,768	+				-0.3
32,768	+				+2.2
32,768	+				+0.5
32,768	+				-1.6
32,768	+				-0.4
32,768	+				+0.5
32,768	+				-0.1
32,768	+				+0.2
32,768	+				-0.0
32,768	+				-0.4
32,768	+				+0.1
32,768	+				-0.5
32,768	+				+0.0
32,768	+				-0.1
32,768	+				-0.6
32,768	+				+0.0
32,768	+				+0.2
32,768	+				+0.1
32,768	+				-1.0
32,768	+				-0.4
32,768	+				-0.5
32,768	+				-0.3
32,768	+				+0.9
32,768	+				-0.0
32,768	+				-0.8
32,768	+				+0.0
32,768	+				+0.6
32,768	+				-2.0
32,768	+				-1.3
32,768	+				+0.2
32,768	+				-0.4
32,768	+				+1.2
32,768	+				-0.2
32,768	+				-0.7
32,769	-				-2.0
32,769	-				+0.3
32,769	-				-0.6
32,769	-				+0.4
32,769	-				+1.7
32,769	-				+0.1
32,769	-				+0.2
32,769	-				-1.1
32,769	-				+0.8
32,769	-				+1.2
32,769	-				-0.0
32,769	-				-0.6
32,769	-				-0.7
32,769	-				-0.1
32,769	-				-0.1
32,769	-				-2.0
32,769	-				-0.7
32,769	-				-0.2
32,769	-				-0.0
32,769	-				-0.6
32,769	-				-0.6
32,769	-				+0.4
32,769	-				+0.1
32,769	-				-0.2
32,769	-				-0.4
32,769	-				-0.7
32,769	-				-0.7
32,769	-				-1.5
32,769	-				-1.7
32,769	-				+0.1
32,769	-				-0.1
32,769	-				-0.8
32,769	-				+1.0
32,769	-				-0.3
32,769	-				-0.3
32,769	-				-0.5
32,769	-				+0.2
32,769	-				+0.3
32,769	-				-0.6
32,769	-				+0.3
32,769	-				-0.9
32,769	-				-1.3
32,769	-				-1.0
32,769	-				+0.1
32,769	-				-0.5
32,769	-				+0.4
32,769	-				+0.7
32,769	-				+1.4
32,769	-				-0.1
32,769	-				-1.8
32,769	-				+0.1
32,769	-				+0.7
32,769	-				+0.1
32,769	-				-0.7
32,769	-				+0.2
32,769	-				-0.1
32,769	-				-0.8
32,769	-				+0.5
32,769	-				+0.3
32,769	-				-0.1
32,769	-				+0.2
32,769	-				+0.8
32,769	-				-0.4
32,769	-				-1.6
32,769	-				+0.1
32,871	+		GFF4398	0.15	-0.3
32,871	+		GFF4398	0.15	-0.8
32,871	+		GFF4398	0.15	+0.2
32,872	-		GFF4398	0.15	-0.3
32,872	-		GFF4398	0.15	-1.1
32,872	-		GFF4398	0.15	+0.0
32,934	+		GFF4398	0.24	-1.3
32,934	+		GFF4398	0.24	+0.6
32,935	-		GFF4398	0.24	-0.7
32,935	-		GFF4398	0.24	-0.1
32,935	-		GFF4398	0.24	-0.1
32,961	+		GFF4398	0.27	+0.7
32,961	+		GFF4398	0.27	+0.2
32,961	+		GFF4398	0.27	-1.6
32,961	+		GFF4398	0.27	-1.1
32,961	+		GFF4398	0.27	-0.3
32,961	+		GFF4398	0.27	-0.6
32,961	+		GFF4398	0.27	+0.7
32,961	+		GFF4398	0.27	-2.3
32,961	+		GFF4398	0.27	-0.3
32,961	+		GFF4398	0.27	-1.4
32,961	+		GFF4398	0.27	+1.0
32,961	+		GFF4398	0.27	+0.7
32,961	+		GFF4398	0.27	+0.5
32,961	+		GFF4398	0.27	-0.7
32,961	+		GFF4398	0.27	-1.0
32,961	+		GFF4398	0.27	-0.6
32,961	+		GFF4398	0.27	+0.0
32,961	+		GFF4398	0.27	+0.4
32,961	+		GFF4398	0.27	-0.6
32,962	-		GFF4398	0.27	-1.6
32,962	-		GFF4398	0.27	+0.1
32,962	-		GFF4398	0.27	-0.3
32,962	-		GFF4398	0.27	-0.3
32,962	-		GFF4398	0.27	-0.5
32,962	-		GFF4398	0.27	-0.3
32,962	-		GFF4398	0.27	+0.5
32,962	-		GFF4398	0.27	+0.2
32,962	-		GFF4398	0.27	-0.6
32,962	-		GFF4398	0.27	-0.8
32,962	-		GFF4398	0.27	+0.0
32,962	-		GFF4398	0.27	-0.9
32,962	-		GFF4398	0.27	-0.2
32,962	-		GFF4398	0.27	-0.8
32,962	-		GFF4398	0.27	-1.3
32,962	-		GFF4398	0.27	+1.4
32,962	-		GFF4398	0.27	-0.5
32,962	-		GFF4398	0.27	-1.4
32,962	-		GFF4398	0.27	-1.5
32,991	+		GFF4398	0.32	-1.0
32,991	+		GFF4398	0.32	-1.1
32,992	-		GFF4398	0.32	-0.7
32,992	-		GFF4398	0.32	-0.2
32,992	-		GFF4398	0.32	-0.7
32,992	-		GFF4398	0.32	-2.0
32,992	-		GFF4398	0.32	-0.6
32,992	-		GFF4398	0.32	-2.7
33,035	+		GFF4398	0.38	-0.6
33,035	+		GFF4398	0.38	-1.6
33,035	+		GFF4398	0.38	-0.8
33,036	-		GFF4398	0.38	-1.3
33,036	-		GFF4398	0.38	-0.3
33,036	-		GFF4398	0.38	-0.6
33,036	-		GFF4398	0.38	-0.4
33,036	-		GFF4398	0.38	-0.3
33,036	-		GFF4398	0.38	+1.2
33,036	-		GFF4398	0.38	-1.2
33,036	-		GFF4398	0.38	-1.3
33,150	+		GFF4398	0.54	-0.2
33,151	-		GFF4398	0.54	-0.1
33,151	-		GFF4398	0.54	-0.3
33,151	-		GFF4398	0.54	+0.3
33,151	-		GFF4398	0.54	-0.8
33,217	+		GFF4398	0.64	+0.2
33,217	+		GFF4398	0.64	+2.3
33,217	+		GFF4398	0.64	-1.8
33,217	+		GFF4398	0.64	-0.8
33,217	+		GFF4398	0.64	-1.0
33,217	+		GFF4398	0.64	+0.7
33,217	+		GFF4398	0.64	-0.4
33,217	+		GFF4398	0.64	-0.4
33,217	+		GFF4398	0.64	+0.2
33,217	+		GFF4398	0.64	+0.2
33,217	+		GFF4398	0.64	-0.3
33,217	+		GFF4398	0.64	-0.4
33,217	+		GFF4398	0.64	-1.1
33,217	+		GFF4398	0.64	+0.2
33,217	+		GFF4398	0.64	-0.7
33,218	-		GFF4398	0.64	-1.0
33,218	-		GFF4398	0.64	+1.3
33,218	-		GFF4398	0.64	-0.7
33,218	-		GFF4398	0.64	-0.6
33,218	-		GFF4398	0.64	-0.0
33,218	-		GFF4398	0.64	-0.6
33,218	-		GFF4398	0.64	-0.1
33,218	-		GFF4398	0.64	+0.2
33,218	-		GFF4398	0.64	-0.8
33,218	-		GFF4398	0.64	-0.1
33,218	-		GFF4398	0.64	+0.2
33,218	-		GFF4398	0.64	+0.3
33,218	-		GFF4398	0.64	-0.8
33,218	-		GFF4398	0.64	-0.1
33,218	-		GFF4398	0.64	-1.4
33,218	-		GFF4398	0.64	+0.2
33,218	-		GFF4398	0.64	-2.0
33,218	-		GFF4398	0.64	+0.4
33,218	-		GFF4398	0.64	-0.6
33,218	-		GFF4398	0.64	-2.5
33,218	-		GFF4398	0.64	-1.7
33,218	-		GFF4398	0.64	-0.7
33,218	-		GFF4398	0.64	-2.6
33,237	-		GFF4398	0.67	-0.2
33,498	+				-0.7
33,523	+				-0.1
33,523	+				-0.6
33,523	+				-0.1
33,523	+				-0.3
33,523	+				+0.2
33,523	+				-0.7
33,523	+				+0.6
33,523	+				+0.0
33,523	+				-0.6
33,523	+				-0.1
33,523	+				-0.3
33,523	+				-1.0
33,523	+				+0.2
33,523	+				-0.9
33,523	+				-0.3
33,523	+				+0.1
33,523	+				+0.7
33,523	+				-0.3
33,523	+				-0.5
33,523	+				-0.3
33,524	-				-0.5
33,524	-				-0.8
33,524	-				+0.0
33,524	-				-0.2
33,524	-				-0.1
33,524	-				+0.9
33,524	-				+0.0
33,524	-				-0.1
33,524	-				+0.4
33,524	-				-1.7
33,524	-				-0.6
33,524	-				-0.4
33,524	-				-0.6
33,527	+				-1.7
33,527	+				+0.5
33,527	+				-0.8
33,527	+				-0.3
33,527	+				-0.6
33,527	+				-0.8
33,527	+				-1.0
33,527	+				-0.1
33,527	+				-0.6
33,527	+				-0.2
33,527	+				+0.9
33,527	+				-0.3
33,527	+				+0.9
33,527	+				-1.4
33,527	+				-0.0
33,527	+				-0.1
33,527	+				+0.7
33,527	+				-0.3
33,527	+				-0.4
33,527	+				-0.6
33,527	+				-1.7
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