Strain Fitness in Variovorax sp. SCN45 around GFF4391

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
19,516	+				-1.1
19,516	+				+0.6
19,517	-				+0.8
19,538	+				+0.3
19,538	+				+0.2
19,539	-				-0.3
19,539	-				+1.5
19,899	+		GFF4390	0.35	-0.1
19,899	+		GFF4390	0.35	+0.7
19,899	+		GFF4390	0.35	+0.2
19,899	+		GFF4390	0.35	-0.3
19,899	+		GFF4390	0.35	-1.1
19,899	+		GFF4390	0.35	-0.8
19,899	+		GFF4390	0.35	+2.7
19,899	+		GFF4390	0.35	+2.0
19,899	+		GFF4390	0.35	+0.6
19,899	+		GFF4390	0.35	-0.0
19,899	+		GFF4390	0.35	-2.5
19,899	+		GFF4390	0.35	-0.3
19,899	+		GFF4390	0.35	-1.6
19,899	+		GFF4390	0.35	-0.6
19,899	+		GFF4390	0.35	+0.7
19,899	+		GFF4390	0.35	+0.7
19,899	+		GFF4390	0.35	-0.4
19,900	-		GFF4390	0.36	+0.5
19,900	-		GFF4390	0.36	+0.6
19,900	-		GFF4390	0.36	-0.3
19,900	-		GFF4390	0.36	+0.0
19,900	-		GFF4390	0.36	-1.1
19,900	-		GFF4390	0.36	-0.5
19,900	-		GFF4390	0.36	-0.8
19,900	-		GFF4390	0.36	+0.5
19,900	-		GFF4390	0.36	-1.3
19,900	-		GFF4390	0.36	-0.3
19,900	-		GFF4390	0.36	-0.6
19,900	-		GFF4390	0.36	+1.3
19,900	-		GFF4390	0.36	-1.0
19,900	-		GFF4390	0.36	-1.1
19,900	-		GFF4390	0.36	-0.2
19,900	-		GFF4390	0.36	-0.8
19,900	-		GFF4390	0.36	+0.4
19,900	-		GFF4390	0.36	-1.1
20,160	+		GFF4390	0.65	+0.4
20,160	+		GFF4390	0.65	-0.9
20,230	+		GFF4390	0.73	-0.3
20,230	+		GFF4390	0.73	+0.4
20,231	-		GFF4390	0.73	-1.1
20,231	-		GFF4390	0.73	-0.5
20,231	-		GFF4390	0.73	+0.4
20,816	+		GFF4391	0.10	-0.2
20,816	+		GFF4391	0.10	-0.4
20,816	+		GFF4391	0.10	-0.1
20,816	+		GFF4391	0.10	-0.1
20,816	+		GFF4391	0.10	-1.0
20,817	-		GFF4391	0.10	+0.5
20,817	-		GFF4391	0.10	-0.8
20,817	-		GFF4391	0.10	-0.5
20,933	+		GFF4391	0.14	-1.4
20,933	+		GFF4391	0.14	-0.1
20,933	+		GFF4391	0.14	+1.7
20,933	+		GFF4391	0.14	+0.7
20,933	+		GFF4391	0.14	-0.3
20,934	-		GFF4391	0.14	-0.8
20,934	-		GFF4391	0.14	-0.5
20,934	-		GFF4391	0.14	+0.2
20,934	-		GFF4391	0.14	-0.6
20,942	+		GFF4391	0.14	-0.6
20,942	+		GFF4391	0.14	+0.4
20,942	+		GFF4391	0.14	-0.5
20,942	+		GFF4391	0.14	-0.1
20,942	+		GFF4391	0.14	-0.3
20,942	+		GFF4391	0.14	-0.9
20,942	+		GFF4391	0.14	+0.2
20,942	+		GFF4391	0.14	+0.5
20,942	+		GFF4391	0.14	-0.7
20,942	+		GFF4391	0.14	-0.1
20,943	-		GFF4391	0.14	+0.2
20,943	-		GFF4391	0.14	+0.0
20,994	-		GFF4391	0.16	-0.3
21,074	+		GFF4391	0.18	-0.4
21,074	+		GFF4391	0.18	-0.6
21,074	+		GFF4391	0.18	+0.0
21,075	-		GFF4391	0.18	+0.2
21,075	-		GFF4391	0.18	-0.6
21,075	-		GFF4391	0.18	-0.4
21,075	-		GFF4391	0.18	+1.3
21,147	+		GFF4391	0.20	+0.1
21,147	+		GFF4391	0.20	-1.7
21,147	+		GFF4391	0.20	-0.7
21,147	+		GFF4391	0.20	-0.5
21,147	+		GFF4391	0.20	+0.3
21,147	+		GFF4391	0.20	-0.3
21,147	+		GFF4391	0.20	-0.8
21,147	+		GFF4391	0.20	-0.7
21,147	+		GFF4391	0.20	-0.3
21,147	+		GFF4391	0.20	-0.1
21,147	+		GFF4391	0.20	-0.2
21,147	+		GFF4391	0.20	-0.4
21,148	-		GFF4391	0.20	-0.2
21,148	-		GFF4391	0.20	+0.5
21,148	-		GFF4391	0.20	+1.0
21,148	-		GFF4391	0.20	+1.0
21,148	-		GFF4391	0.20	-0.3
21,148	-		GFF4391	0.20	+2.5
21,162	+		GFF4391	0.21	+0.4
21,162	+		GFF4391	0.21	+0.0
21,162	+		GFF4391	0.21	+0.3
21,162	+		GFF4391	0.21	-0.5
21,162	+		GFF4391	0.21	+0.5
21,162	+		GFF4391	0.21	+0.2
21,162	+		GFF4391	0.21	-1.1
21,162	+		GFF4391	0.21	-0.1
21,162	+		GFF4391	0.21	-0.7
21,162	+		GFF4391	0.21	+0.3
21,162	+		GFF4391	0.21	-0.3
21,163	-		GFF4391	0.21	-0.4
21,163	-		GFF4391	0.21	-0.2
21,163	-		GFF4391	0.21	+0.3
21,163	-		GFF4391	0.21	+0.0
21,163	-		GFF4391	0.21	-0.4
21,163	-		GFF4391	0.21	+0.1
21,163	-		GFF4391	0.21	-0.5
21,163	-		GFF4391	0.21	-0.2
21,163	-		GFF4391	0.21	+0.5
21,163	-		GFF4391	0.21	-0.0
21,188	+		GFF4391	0.22	+0.2
21,188	+		GFF4391	0.22	+0.2
21,188	+		GFF4391	0.22	-0.6
21,189	-		GFF4391	0.22	+0.0
21,189	-		GFF4391	0.22	-0.5
21,189	-		GFF4391	0.22	-1.2
21,189	-		GFF4391	0.22	-0.8
21,189	-		GFF4391	0.22	-0.1
21,189	-		GFF4391	0.22	-0.5
21,248	+		GFF4391	0.23	-0.5
21,249	-		GFF4391	0.23	-0.3
21,249	-		GFF4391	0.23	-0.4
21,771	-		GFF4391	0.39	+0.3
21,771	-		GFF4391	0.39	-0.5
21,771	-		GFF4391	0.39	+1.3
21,918	-		GFF4391	0.44	-0.6
21,918	-		GFF4391	0.44	-0.3
21,943	-		GFF4391	0.44	-0.6
21,977	+		GFF4391	0.45	+0.7
21,977	+		GFF4391	0.45	+0.7
21,977	+		GFF4391	0.45	-0.7
21,977	+		GFF4391	0.45	-0.3
21,977	+		GFF4391	0.45	+0.1
21,977	+		GFF4391	0.45	-0.4
21,977	+		GFF4391	0.45	-0.1
21,977	+		GFF4391	0.45	-0.3
21,977	+		GFF4391	0.45	-2.5
21,977	+		GFF4391	0.45	+1.7
21,977	+		GFF4391	0.45	+0.0
21,977	+		GFF4391	0.45	-0.7
21,977	+		GFF4391	0.45	-1.1
21,977	+		GFF4391	0.45	+0.3
21,977	+		GFF4391	0.45	+0.3
21,977	+		GFF4391	0.45	-0.6
21,977	+		GFF4391	0.45	-0.3
21,978	-		GFF4391	0.45	-1.1
21,978	-		GFF4391	0.45	+0.2
21,978	-		GFF4391	0.45	-0.8
21,978	-		GFF4391	0.45	-1.3
21,978	-		GFF4391	0.45	+0.7
21,978	-		GFF4391	0.45	+0.5
21,978	-		GFF4391	0.45	+0.1
21,978	-		GFF4391	0.45	-1.7
21,978	-		GFF4391	0.45	-0.3
21,978	-		GFF4391	0.45	-0.6
21,978	-		GFF4391	0.45	-0.6
21,978	-		GFF4391	0.45	+0.1
21,978	-		GFF4391	0.45	-0.7
22,112	+		GFF4391	0.49	+0.3
22,112	+		GFF4391	0.49	-0.7
22,112	+		GFF4391	0.49	-0.5
22,112	+		GFF4391	0.49	+0.2
22,113	-		GFF4391	0.49	-0.1
22,113	-		GFF4391	0.49	-0.1
22,113	-		GFF4391	0.49	-0.0
22,113	-		GFF4391	0.49	-1.6
22,113	-		GFF4391	0.49	-0.3
22,113	-		GFF4391	0.49	-0.3
22,409	+		GFF4391	0.58	+0.4
22,409	+		GFF4391	0.58	-0.4
22,409	+		GFF4391	0.58	+0.3
22,409	+		GFF4391	0.58	+0.5
22,409	+		GFF4391	0.58	+0.5
22,410	-		GFF4391	0.58	-2.0
22,410	-		GFF4391	0.58	-0.6
22,410	-		GFF4391	0.58	-0.3
22,670	+		GFF4391	0.66	+0.3
22,670	+		GFF4391	0.66	-0.5
22,736	+		GFF4391	0.68	-0.9
22,736	+		GFF4391	0.68	-0.9
22,736	+		GFF4391	0.68	-0.4
22,736	+		GFF4391	0.68	+1.2
22,736	+		GFF4391	0.68	+0.2
22,736	+		GFF4391	0.68	-0.3
22,736	+		GFF4391	0.68	-0.3
22,736	+		GFF4391	0.68	-0.5
22,736	+		GFF4391	0.68	-0.4
22,737	-		GFF4391	0.68	+0.2
22,737	-		GFF4391	0.68	-0.9
22,737	-		GFF4391	0.68	+0.6
22,737	-		GFF4391	0.68	+1.2
22,737	-		GFF4391	0.68	+0.1
22,865	+		GFF4391	0.72	+1.1
22,865	+		GFF4391	0.72	+0.2
22,865	+		GFF4391	0.72	-0.8
22,865	+		GFF4391	0.72	-1.1
22,865	+		GFF4391	0.72	-0.1
22,865	+		GFF4391	0.72	-0.0
22,865	+		GFF4391	0.72	-1.6
22,866	-		GFF4391	0.72	-0.0
22,866	-		GFF4391	0.72	-1.1
22,866	-		GFF4391	0.72	+0.4
22,866	-		GFF4391	0.72	-0.2
22,866	-		GFF4391	0.72	-0.6
22,896	+		GFF4391	0.73	-0.5
22,896	+		GFF4391	0.73	-0.4
22,897	-		GFF4391	0.73	-0.3
22,897	-		GFF4391	0.73	-1.4
22,897	-		GFF4391	0.73	-0.2
22,897	-		GFF4391	0.73	+0.1
22,897	-		GFF4391	0.73	-0.9
23,083	+		GFF4391	0.79	-0.4
23,083	+		GFF4391	0.79	-1.1
23,083	+		GFF4391	0.79	+0.0
23,083	+		GFF4391	0.79	-0.1
23,084	-		GFF4391	0.79	+0.2
23,084	-		GFF4391	0.79	-2.1
23,084	-		GFF4391	0.79	+0.5
23,084	-		GFF4391	0.79	-0.4
23,084	-		GFF4391	0.79	-0.8
23,084	-		GFF4391	0.79	-0.0
23,084	-		GFF4391	0.79	+1.0
23,084	-		GFF4391	0.79	-0.4
23,123	+		GFF4391	0.80	+0.1
23,123	+		GFF4391	0.80	+0.7
23,123	+		GFF4391	0.80	-1.1
23,123	+		GFF4391	0.80	-0.1
23,123	+		GFF4391	0.80	-0.1
23,124	-		GFF4391	0.80	+1.0
23,124	-		GFF4391	0.80	-0.0
23,124	-		GFF4391	0.80	-0.0
23,124	-		GFF4391	0.80	-0.0
23,124	-		GFF4391	0.80	+0.0
23,124	-		GFF4391	0.80	-0.5
23,124	-		GFF4391	0.80	-0.3
23,237	+		GFF4391	0.83	+0.1
23,238	-		GFF4391	0.83	-0.8
23,238	-		GFF4391	0.83	+0.4
23,238	-		GFF4391	0.83	+0.4
23,282	+		GFF4391	0.85	-0.1
23,282	+		GFF4391	0.85	-0.3
23,282	+		GFF4391	0.85	-0.1
23,282	+		GFF4391	0.85	-0.2
23,283	-		GFF4391	0.85	+1.0
23,283	-		GFF4391	0.85	+0.0
23,327	+		GFF4391	0.86	+0.3
23,327	+		GFF4391	0.86	-0.3
23,327	+		GFF4391	0.86	-1.9
23,327	+		GFF4391	0.86	-0.7
23,327	+		GFF4391	0.86	-0.5
23,327	+		GFF4391	0.86	+0.0
23,327	+		GFF4391	0.86	-0.5
23,327	+		GFF4391	0.86	+0.2
23,327	+		GFF4391	0.86	-0.3
23,327	+		GFF4391	0.86	-0.2
23,327	+		GFF4391	0.86	-0.2
23,328	-		GFF4391	0.86	-1.9
23,328	-		GFF4391	0.86	-0.8
23,328	-		GFF4391	0.86	-0.5
23,328	-		GFF4391	0.86	+1.3
23,328	-		GFF4391	0.86	-0.4
23,328	-		GFF4391	0.86	-0.1
23,328	-		GFF4391	0.86	+0.2
23,328	-		GFF4391	0.86	-0.4
23,328	-		GFF4391	0.86	+0.5
23,328	-		GFF4391	0.86	+0.1
23,328	-		GFF4391	0.86	+0.7
23,328	-		GFF4391	0.86	+1.5
23,328	-		GFF4391	0.86	-0.8
23,328	-		GFF4391	0.86	-0.1
23,328	-		GFF4391	0.86	-0.2
23,328	-		GFF4391	0.86	+0.6
23,328	-		GFF4391	0.86	-0.2
23,345	+		GFF4391	0.87	-0.1
23,345	+		GFF4391	0.87	-0.4
23,345	+		GFF4391	0.87	-0.3
23,345	+		GFF4391	0.87	-0.5
23,345	+		GFF4391	0.87	+0.0
23,345	+		GFF4391	0.87	-1.0
23,345	+		GFF4391	0.87	-0.2
23,345	+		GFF4391	0.87	-0.7
23,345	+		GFF4391	0.87	-0.1
23,345	+		GFF4391	0.87	-0.5
23,345	+		GFF4391	0.87	-0.9
23,346	-		GFF4391	0.87	-1.2
23,346	-		GFF4391	0.87	-0.1
23,346	-		GFF4391	0.87	-0.4
23,346	-		GFF4391	0.87	-0.2
23,346	-		GFF4391	0.87	-0.8
23,348	+		GFF4391	0.87	+0.1
23,348	+		GFF4391	0.87	-0.7
23,348	+		GFF4391	0.87	+0.6
23,348	+		GFF4391	0.87	-0.2
23,348	+		GFF4391	0.87	-1.3
23,348	+		GFF4391	0.87	+0.9
23,348	+		GFF4391	0.87	-0.7
23,348	+		GFF4391	0.87	-0.8
23,348	+		GFF4391	0.87	-0.1
23,349	-		GFF4391	0.87	+0.0
23,349	-		GFF4391	0.87	-0.3
23,349	-		GFF4391	0.87	+0.2
23,349	-		GFF4391	0.87	-0.6
23,732	+				+0.6
23,732	+				-0.8
23,732	+				-0.8
23,732	+				-0.3
23,732	+				-0.3
23,732	+				-0.2
23,733	-				-0.0
23,733	-				-1.1
23,733	-				-1.1
23,733	-				-0.6
23,733	-				+0.2
23,733	-				-1.4
23,733	-				-1.1
23,733	-				-0.2
23,733	-				+0.4
23,755	+				-1.0
23,755	+				+0.2
23,755	+				-0.2
23,755	+				-0.3
23,755	+				-0.9
23,755	+				-0.1
23,755	+				-0.1
23,756	-				+0.7
23,756	-				+0.1
23,756	-				-0.6
24,024	+		GFF4392	0.16	+0.2
24,024	+		GFF4392	0.16	-1.3
24,024	+		GFF4392	0.16	-1.4
24,024	+		GFF4392	0.16	+2.2
24,024	+		GFF4392	0.16	+0.0
24,024	+		GFF4392	0.16	-0.1
24,024	+		GFF4392	0.16	+0.2
24,024	+		GFF4392	0.16	-0.3
24,024	+		GFF4392	0.16	-0.5
24,024	+		GFF4392	0.16	+0.1
24,025	-		GFF4392	0.16	-0.7
24,025	-		GFF4392	0.16	-1.1
24,025	-		GFF4392	0.16	+0.4
24,025	-		GFF4392	0.16	-1.1
24,181	+		GFF4392	0.27	-0.2
24,181	+		GFF4392	0.27	-2.0
24,181	+		GFF4392	0.27	+0.2
24,181	+		GFF4392	0.27	+1.7
24,182	-		GFF4392	0.27	-0.7
24,182	-		GFF4392	0.27	-1.4
24,205	+		GFF4392	0.28	-0.4
24,205	+		GFF4392	0.28	-1.7
24,205	+		GFF4392	0.28	-1.2
24,205	+		GFF4392	0.28	-0.5
24,205	+		GFF4392	0.28	-0.5
24,206	+		GFF4392	0.28	+0.2
24,206	-		GFF4392	0.28	-0.6
24,206	-		GFF4392	0.28	-1.4
24,206	-		GFF4392	0.28	-1.3
24,206	-		GFF4392	0.28	+0.4
24,206	-		GFF4392	0.28	-0.9
24,206	-		GFF4392	0.28	+1.2
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