Strain Fitness in Variovorax sp. SCN45 around GFF439

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF438 and GFF439 overlap by 4 nucleotidesGFF439 and GFF440 are separated by 21 nucleotides GFF437 - Antiholin-like protein LrgA, at 474,788 to 475,210 GFF437 GFF438 - L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81), at 475,171 to 476,187 GFF438 GFF439 - Adenosylcobinamide-phosphate synthase (EC 6.3.1.10), at 476,184 to 477,161 GFF439 GFF440 - CobN-like chelatase BtuS for metalloporphyrine salvage, at 477,183 to 481,196 GFF440 Position (kb) 476 477 478Strain fitness (log2 ratio) -2 -1 0 1 2 3at 475.337 kb on + strand, within GFF438at 475.337 kb on + strand, within GFF438at 475.338 kb on - strand, within GFF438at 475.595 kb on + strand, within GFF438at 475.595 kb on + strand, within GFF438at 475.709 kb on + strand, within GFF438at 475.709 kb on + strand, within GFF438at 475.710 kb on - strand, within GFF438at 475.710 kb on - strand, within GFF438at 475.710 kb on - strand, within GFF438at 475.889 kb on + strand, within GFF438at 475.890 kb on - strand, within GFF438at 475.890 kb on - strand, within GFF438at 475.890 kb on - strand, within GFF438at 475.890 kb on - strand, within GFF438at 475.890 kb on - strand, within GFF438at 476.039 kb on + strand, within GFF438at 476.039 kb on + strand, within GFF438at 476.039 kb on + strand, within GFF438at 476.054 kb on + strand, within GFF438at 476.055 kb on - strand, within GFF438at 476.323 kb on + strand, within GFF439at 476.323 kb on + strand, within GFF439at 476.323 kb on + strand, within GFF439at 476.324 kb on - strand, within GFF439at 476.324 kb on - strand, within GFF439at 476.561 kb on - strand, within GFF439at 476.596 kb on + strand, within GFF439at 476.597 kb on - strand, within GFF439at 476.799 kb on + strand, within GFF439at 476.800 kb on - strand, within GFF439at 476.800 kb on - strand, within GFF439at 477.034 kb on + strand, within GFF439at 477.034 kb on + strand, within GFF439at 477.034 kb on + strand, within GFF439at 477.034 kb on + strand, within GFF439at 477.034 kb on + strand, within GFF439at 477.034 kb on + strand, within GFF439at 477.034 kb on + strand, within GFF439at 477.035 kb on - strand, within GFF439at 477.035 kb on - strand, within GFF439at 477.035 kb on - strand, within GFF439at 477.035 kb on - strand, within GFF439at 477.035 kb on - strand, within GFF439at 477.035 kb on - strand, within GFF439at 477.035 kb on - strand, within GFF439at 477.035 kb on - strand, within GFF439at 477.064 kb on + strandat 477.065 kb on - strandat 477.065 kb on - strandat 477.136 kb on + strandat 477.136 kb on + strandat 477.137 kb on - strandat 477.137 kb on - strandat 477.302 kb on + strandat 477.520 kb on + strandat 477.520 kb on + strandat 477.520 kb on + strandat 477.520 kb on + strandat 477.520 kb on + strandat 477.520 kb on + strandat 477.521 kb on - strandat 477.521 kb on - strandat 477.565 kb on + strandat 477.565 kb on + strandat 477.566 kb on - strandat 477.566 kb on - strandat 477.566 kb on - strandat 477.566 kb on - strandat 477.658 kb on + strand, within GFF440at 477.658 kb on + strand, within GFF440at 477.658 kb on + strand, within GFF440at 477.658 kb on + strand, within GFF440at 477.658 kb on + strand, within GFF440at 477.658 kb on + strand, within GFF440at 477.658 kb on + strand, within GFF440at 477.659 kb on - strand, within GFF440at 477.659 kb on - strand, within GFF440at 477.659 kb on - strand, within GFF440at 477.659 kb on - strand, within GFF440at 477.659 kb on - strand, within GFF440at 477.659 kb on - strand, within GFF440at 477.673 kb on + strand, within GFF440at 477.673 kb on + strand, within GFF440at 477.673 kb on + strand, within GFF440at 477.673 kb on + strand, within GFF440at 477.673 kb on + strand, within GFF440at 477.673 kb on + strand, within GFF440at 477.673 kb on + strand, within GFF440at 477.673 kb on + strand, within GFF440at 477.673 kb on + strand, within GFF440at 477.673 kb on + strand, within GFF440at 477.673 kb on + strand, within GFF440at 477.673 kb on + strand, within GFF440at 477.673 kb on + strand, within GFF440at 477.673 kb on + strand, within GFF440at 477.674 kb on - strand, within GFF440at 477.674 kb on - strand, within GFF440at 477.674 kb on - strand, within GFF440at 477.674 kb on - strand, within GFF440at 477.674 kb on - strand, within GFF440at 477.674 kb on - strand, within GFF440at 477.674 kb on - strand, within GFF440at 477.674 kb on - strand, within GFF440at 477.674 kb on - strand, within GFF440at 477.674 kb on - strand, within GFF440at 477.674 kb on - strand, within GFF440at 477.674 kb on - strand, within GFF440at 477.782 kb on - strand, within GFF440at 477.823 kb on + strand, within GFF440at 477.904 kb on + strand, within GFF440at 477.904 kb on + strand, within GFF440at 477.905 kb on - strand, within GFF440at 477.905 kb on - strand, within GFF440at 477.961 kb on + strand, within GFF440at 477.994 kb on + strand, within GFF440at 478.091 kb on - strand, within GFF440at 478.091 kb on - strand, within GFF440at 478.114 kb on + strand, within GFF440at 478.114 kb on + strand, within GFF440at 478.114 kb on + strand, within GFF440at 478.115 kb on - strand, within GFF440at 478.115 kb on - strand, within GFF440

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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475,337 + GFF438 0.16 +0.1
475,337 + GFF438 0.16 -0.6
475,338 - GFF438 0.16 -1.6
475,595 + GFF438 0.42 -0.5
475,595 + GFF438 0.42 -0.8
475,709 + GFF438 0.53 -0.4
475,709 + GFF438 0.53 -0.7
475,710 - GFF438 0.53 +0.1
475,710 - GFF438 0.53 -0.2
475,710 - GFF438 0.53 -0.0
475,889 + GFF438 0.71 -0.6
475,890 - GFF438 0.71 -0.0
475,890 - GFF438 0.71 +1.0
475,890 - GFF438 0.71 +0.2
475,890 - GFF438 0.71 +0.5
475,890 - GFF438 0.71 +0.8
476,039 + GFF438 0.85 +1.0
476,039 + GFF438 0.85 -0.6
476,039 + GFF438 0.85 -0.3
476,054 + GFF438 0.87 -0.0
476,055 - GFF438 0.87 +0.9
476,323 + GFF439 0.14 -0.0
476,323 + GFF439 0.14 +0.5
476,323 + GFF439 0.14 -1.0
476,324 - GFF439 0.14 +0.9
476,324 - GFF439 0.14 -1.1
476,561 - GFF439 0.39 +0.1
476,596 + GFF439 0.42 +0.2
476,597 - GFF439 0.42 -0.6
476,799 + GFF439 0.63 -0.0
476,800 - GFF439 0.63 -1.2
476,800 - GFF439 0.63 -0.2
477,034 + GFF439 0.87 -0.6
477,034 + GFF439 0.87 -0.4
477,034 + GFF439 0.87 +0.3
477,034 + GFF439 0.87 -0.0
477,034 + GFF439 0.87 -0.8
477,034 + GFF439 0.87 -1.9
477,034 + GFF439 0.87 +0.1
477,035 - GFF439 0.87 -0.4
477,035 - GFF439 0.87 +0.7
477,035 - GFF439 0.87 +0.8
477,035 - GFF439 0.87 +0.2
477,035 - GFF439 0.87 -0.0
477,035 - GFF439 0.87 +1.1
477,035 - GFF439 0.87 +1.2
477,035 - GFF439 0.87 +0.7
477,064 + -0.6
477,065 - +1.6
477,065 - +0.5
477,136 + -0.1
477,136 + +0.2
477,137 - +0.2
477,137 - +0.1
477,302 + -1.7
477,520 + +0.4
477,520 + +0.1
477,520 + +1.0
477,520 + -0.2
477,520 + +0.8
477,520 + -1.0
477,521 - -0.1
477,521 - +3.1
477,565 + -1.0
477,565 + +0.2
477,566 - +0.3
477,566 - -0.1
477,566 - -0.0
477,566 - -0.2
477,658 + GFF440 0.12 +0.6
477,658 + GFF440 0.12 -0.3
477,658 + GFF440 0.12 -1.2
477,658 + GFF440 0.12 -1.8
477,658 + GFF440 0.12 +2.1
477,658 + GFF440 0.12 -0.2
477,658 + GFF440 0.12 +0.1
477,659 - GFF440 0.12 -0.2
477,659 - GFF440 0.12 -1.6
477,659 - GFF440 0.12 -0.4
477,659 - GFF440 0.12 +0.5
477,659 - GFF440 0.12 -0.1
477,659 - GFF440 0.12 +0.9
477,673 + GFF440 0.12 -0.6
477,673 + GFF440 0.12 +0.7
477,673 + GFF440 0.12 +0.1
477,673 + GFF440 0.12 +0.4
477,673 + GFF440 0.12 -1.5
477,673 + GFF440 0.12 -1.1
477,673 + GFF440 0.12 +1.1
477,673 + GFF440 0.12 -0.6
477,673 + GFF440 0.12 -1.0
477,673 + GFF440 0.12 +0.1
477,673 + GFF440 0.12 -0.2
477,673 + GFF440 0.12 +0.1
477,673 + GFF440 0.12 +0.2
477,673 + GFF440 0.12 +0.1
477,674 - GFF440 0.12 -0.4
477,674 - GFF440 0.12 +0.8
477,674 - GFF440 0.12 -1.2
477,674 - GFF440 0.12 +0.8
477,674 - GFF440 0.12 -0.3
477,674 - GFF440 0.12 +0.3
477,674 - GFF440 0.12 -1.8
477,674 - GFF440 0.12 -0.7
477,674 - GFF440 0.12 -0.0
477,674 - GFF440 0.12 -0.6
477,674 - GFF440 0.12 -0.6
477,674 - GFF440 0.12 -0.1
477,782 - GFF440 0.15 -1.8
477,823 + GFF440 0.16 -0.1
477,904 + GFF440 0.18 -0.6
477,904 + GFF440 0.18 +0.4
477,905 - GFF440 0.18 -0.3
477,905 - GFF440 0.18 +1.2
477,961 + GFF440 0.19 +0.6
477,994 + GFF440 0.20 +1.3
478,091 - GFF440 0.23 -0.5
478,091 - GFF440 0.23 -0.1
478,114 + GFF440 0.23 +0.6
478,114 + GFF440 0.23 +0.8
478,114 + GFF440 0.23 -0.4
478,115 - GFF440 0.23 -1.0
478,115 - GFF440 0.23 -0.4

Or see this region's nucleotide sequence