Strain Fitness in Variovorax sp. SCN45 around GFF4376

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4375 and GFF4376 are separated by 632 nucleotidesGFF4376 and GFF4377 are separated by 80 nucleotides GFF4375 - FIG00463055: hypothetical protein, at 5,222 to 6,013 GFF4375 GFF4376 - UPF0380 proteins YafZ and homologs, at 6,646 to 7,476 GFF4376 GFF4377 - putative plasmid stabilization protein, at 7,557 to 9,608 GFF4377 Position (kb) 6 7 8Strain fitness (log2 ratio) -2 -1 0 1 2at 5.758 kb on + strand, within GFF4375at 5.759 kb on - strand, within GFF4375at 5.880 kb on + strand, within GFF4375at 5.880 kb on + strand, within GFF4375at 5.881 kb on - strand, within GFF4375at 5.881 kb on - strand, within GFF4375at 5.881 kb on - strand, within GFF4375at 5.964 kb on + strandat 5.964 kb on + strandat 5.965 kb on - strandat 5.965 kb on - strandat 5.965 kb on - strandat 6.050 kb on + strandat 6.050 kb on + strandat 6.051 kb on - strandat 6.066 kb on + strandat 6.066 kb on + strandat 6.066 kb on + strandat 6.066 kb on + strandat 6.066 kb on + strandat 6.066 kb on + strandat 6.067 kb on - strandat 6.067 kb on - strandat 6.125 kb on + strandat 6.190 kb on + strandat 6.190 kb on + strandat 6.190 kb on + strandat 6.190 kb on + strandat 6.190 kb on + strandat 6.190 kb on + strandat 6.383 kb on + strandat 6.384 kb on - strandat 6.592 kb on + strandat 6.728 kb on + strandat 6.779 kb on - strand, within GFF4376at 6.784 kb on + strand, within GFF4376at 6.784 kb on + strand, within GFF4376at 6.784 kb on + strand, within GFF4376at 6.784 kb on + strand, within GFF4376at 6.784 kb on + strand, within GFF4376at 6.784 kb on + strand, within GFF4376at 6.784 kb on + strand, within GFF4376at 6.784 kb on + strand, within GFF4376at 6.784 kb on + strand, within GFF4376at 6.784 kb on + strand, within GFF4376at 6.784 kb on + strand, within GFF4376at 6.784 kb on + strand, within GFF4376at 6.784 kb on + strand, within GFF4376at 6.784 kb on + strand, within GFF4376at 6.784 kb on + strand, within GFF4376at 6.784 kb on + strand, within GFF4376at 6.784 kb on + strand, within GFF4376at 6.784 kb on + strand, within GFF4376at 6.784 kb on + strand, within GFF4376at 6.784 kb on + strand, within GFF4376at 6.784 kb on + strand, within GFF4376at 6.784 kb on + strand, within GFF4376at 6.784 kb on + strand, within GFF4376at 6.785 kb on - strand, within GFF4376at 6.785 kb on - strand, within GFF4376at 6.785 kb on - strand, within GFF4376at 6.785 kb on - strand, within GFF4376at 6.785 kb on - strand, within GFF4376at 6.785 kb on - strand, within GFF4376at 6.785 kb on - strand, within GFF4376at 6.785 kb on - strand, within GFF4376at 6.785 kb on - strand, within GFF4376at 6.785 kb on - strand, within GFF4376at 6.785 kb on - strand, within GFF4376at 6.785 kb on - strand, within GFF4376at 6.785 kb on - strand, within GFF4376at 6.785 kb on - strand, within GFF4376at 6.785 kb on - strand, within GFF4376at 6.785 kb on - strand, within GFF4376at 6.785 kb on - strand, within GFF4376at 6.786 kb on + strand, within GFF4376at 6.786 kb on + strand, within GFF4376at 6.786 kb on + strand, within GFF4376at 6.786 kb on + strand, within GFF4376at 6.787 kb on - strand, within GFF4376at 6.787 kb on - strand, within GFF4376at 6.787 kb on - strand, within GFF4376at 6.885 kb on + strand, within GFF4376at 6.885 kb on + strand, within GFF4376at 6.886 kb on - strand, within GFF4376at 6.886 kb on - strand, within GFF4376at 6.982 kb on + strand, within GFF4376at 6.982 kb on + strand, within GFF4376at 6.982 kb on + strand, within GFF4376at 7.105 kb on + strand, within GFF4376at 7.105 kb on + strand, within GFF4376at 7.105 kb on + strand, within GFF4376at 7.106 kb on - strand, within GFF4376at 7.106 kb on - strand, within GFF4376at 7.219 kb on + strand, within GFF4376at 7.219 kb on + strand, within GFF4376at 7.219 kb on + strand, within GFF4376at 7.219 kb on + strand, within GFF4376at 7.219 kb on + strand, within GFF4376at 7.220 kb on - strand, within GFF4376at 7.220 kb on - strand, within GFF4376at 7.220 kb on - strand, within GFF4376at 7.397 kb on + strandat 7.543 kb on + strandat 7.544 kb on - strandat 7.550 kb on + strandat 7.550 kb on + strandat 7.550 kb on + strandat 7.550 kb on + strandat 7.550 kb on + strandat 7.551 kb on - strandat 7.551 kb on - strandat 7.551 kb on - strandat 7.551 kb on - strandat 7.551 kb on - strandat 7.551 kb on - strandat 7.551 kb on - strandat 7.551 kb on - strandat 7.642 kb on + strandat 7.642 kb on + strandat 7.642 kb on + strandat 7.642 kb on + strandat 7.642 kb on + strandat 7.643 kb on - strandat 7.643 kb on - strandat 7.643 kb on - strandat 7.643 kb on - strandat 7.643 kb on - strandat 7.791 kb on + strand, within GFF4377at 7.791 kb on + strand, within GFF4377at 7.791 kb on + strand, within GFF4377at 7.791 kb on + strand, within GFF4377at 7.792 kb on - strand, within GFF4377at 7.792 kb on - strand, within GFF4377at 7.828 kb on + strand, within GFF4377at 7.828 kb on + strand, within GFF4377at 7.829 kb on - strand, within GFF4377at 7.866 kb on + strand, within GFF4377at 7.866 kb on + strand, within GFF4377at 7.866 kb on + strand, within GFF4377at 7.867 kb on - strand, within GFF4377at 8.059 kb on - strand, within GFF4377at 8.094 kb on + strand, within GFF4377at 8.105 kb on + strand, within GFF4377at 8.105 kb on + strand, within GFF4377at 8.106 kb on - strand, within GFF4377at 8.106 kb on - strand, within GFF4377at 8.175 kb on + strand, within GFF4377at 8.175 kb on + strand, within GFF4377at 8.175 kb on + strand, within GFF4377at 8.175 kb on + strand, within GFF4377at 8.175 kb on + strand, within GFF4377at 8.175 kb on + strand, within GFF4377at 8.175 kb on + strand, within GFF4377at 8.175 kb on + strand, within GFF4377at 8.176 kb on - strand, within GFF4377at 8.176 kb on - strand, within GFF4377at 8.176 kb on - strand, within GFF4377at 8.176 kb on - strand, within GFF4377at 8.176 kb on - strand, within GFF4377at 8.283 kb on + strand, within GFF4377at 8.284 kb on - strand, within GFF4377at 8.343 kb on + strand, within GFF4377at 8.343 kb on + strand, within GFF4377at 8.343 kb on + strand, within GFF4377at 8.343 kb on + strand, within GFF4377at 8.343 kb on + strand, within GFF4377at 8.343 kb on + strand, within GFF4377at 8.343 kb on + strand, within GFF4377at 8.343 kb on + strand, within GFF4377at 8.344 kb on - strand, within GFF4377at 8.344 kb on - strand, within GFF4377at 8.344 kb on - strand, within GFF4377at 8.344 kb on - strand, within GFF4377at 8.344 kb on - strand, within GFF4377at 8.344 kb on - strand, within GFF4377at 8.344 kb on - strand, within GFF4377at 8.344 kb on - strand, within GFF4377at 8.344 kb on - strand, within GFF4377

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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5,758 + GFF4375 0.68 +0.4
5,759 - GFF4375 0.68 -0.9
5,880 + GFF4375 0.83 -0.8
5,880 + GFF4375 0.83 +1.3
5,881 - GFF4375 0.83 -0.5
5,881 - GFF4375 0.83 +1.2
5,881 - GFF4375 0.83 +0.2
5,964 + +0.1
5,964 + -0.3
5,965 - -0.6
5,965 - -0.8
5,965 - +0.0
6,050 + +1.2
6,050 + -0.4
6,051 - -0.5
6,066 + -0.9
6,066 + -0.2
6,066 + +0.1
6,066 + +0.0
6,066 + -2.1
6,066 + -0.4
6,067 - +1.5
6,067 - -0.9
6,125 + -0.3
6,190 + -0.5
6,190 + -1.6
6,190 + -0.0
6,190 + -1.1
6,190 + +1.2
6,190 + -0.4
6,383 + -0.1
6,384 - +0.7
6,592 + -1.2
6,728 + -0.7
6,779 - GFF4376 0.16 -0.1
6,784 + GFF4376 0.17 -0.1
6,784 + GFF4376 0.17 -0.3
6,784 + GFF4376 0.17 -1.0
6,784 + GFF4376 0.17 -1.3
6,784 + GFF4376 0.17 -1.3
6,784 + GFF4376 0.17 +0.4
6,784 + GFF4376 0.17 -0.8
6,784 + GFF4376 0.17 -0.4
6,784 + GFF4376 0.17 -0.6
6,784 + GFF4376 0.17 -0.2
6,784 + GFF4376 0.17 +0.2
6,784 + GFF4376 0.17 +0.0
6,784 + GFF4376 0.17 +0.0
6,784 + GFF4376 0.17 +0.0
6,784 + GFF4376 0.17 +2.0
6,784 + GFF4376 0.17 -0.5
6,784 + GFF4376 0.17 -0.2
6,784 + GFF4376 0.17 -1.6
6,784 + GFF4376 0.17 -0.6
6,784 + GFF4376 0.17 -0.0
6,784 + GFF4376 0.17 -0.1
6,784 + GFF4376 0.17 +1.2
6,784 + GFF4376 0.17 -0.8
6,785 - GFF4376 0.17 +0.2
6,785 - GFF4376 0.17 -0.5
6,785 - GFF4376 0.17 -0.3
6,785 - GFF4376 0.17 -0.6
6,785 - GFF4376 0.17 -2.6
6,785 - GFF4376 0.17 +1.7
6,785 - GFF4376 0.17 +1.2
6,785 - GFF4376 0.17 -1.5
6,785 - GFF4376 0.17 +1.7
6,785 - GFF4376 0.17 +0.2
6,785 - GFF4376 0.17 +0.4
6,785 - GFF4376 0.17 -0.7
6,785 - GFF4376 0.17 -0.0
6,785 - GFF4376 0.17 -1.1
6,785 - GFF4376 0.17 +1.7
6,785 - GFF4376 0.17 -1.1
6,785 - GFF4376 0.17 -0.6
6,786 + GFF4376 0.17 -0.1
6,786 + GFF4376 0.17 +1.2
6,786 + GFF4376 0.17 -2.1
6,786 + GFF4376 0.17 +1.2
6,787 - GFF4376 0.17 -0.2
6,787 - GFF4376 0.17 -0.7
6,787 - GFF4376 0.17 -2.1
6,885 + GFF4376 0.29 -1.1
6,885 + GFF4376 0.29 -0.5
6,886 - GFF4376 0.29 -0.2
6,886 - GFF4376 0.29 -0.5
6,982 + GFF4376 0.40 -0.4
6,982 + GFF4376 0.40 -0.4
6,982 + GFF4376 0.40 -0.0
7,105 + GFF4376 0.55 -0.3
7,105 + GFF4376 0.55 +0.3
7,105 + GFF4376 0.55 -0.8
7,106 - GFF4376 0.55 +0.2
7,106 - GFF4376 0.55 -1.2
7,219 + GFF4376 0.69 +0.2
7,219 + GFF4376 0.69 -0.9
7,219 + GFF4376 0.69 -0.3
7,219 + GFF4376 0.69 +0.7
7,219 + GFF4376 0.69 -0.4
7,220 - GFF4376 0.69 -0.6
7,220 - GFF4376 0.69 -0.8
7,220 - GFF4376 0.69 +0.0
7,397 + +0.3
7,543 + -0.6
7,544 - -0.4
7,550 + -0.8
7,550 + -0.6
7,550 + -1.1
7,550 + -0.5
7,550 + +0.4
7,551 - -0.2
7,551 - -0.0
7,551 - -0.4
7,551 - +0.1
7,551 - -0.2
7,551 - +0.7
7,551 - +0.3
7,551 - -0.0
7,642 + -0.5
7,642 + -0.1
7,642 + -0.2
7,642 + +0.2
7,642 + +0.0
7,643 - -1.3
7,643 - -0.6
7,643 - +0.5
7,643 - +0.2
7,643 - +1.2
7,791 + GFF4377 0.11 -0.8
7,791 + GFF4377 0.11 -0.3
7,791 + GFF4377 0.11 +0.2
7,791 + GFF4377 0.11 +0.1
7,792 - GFF4377 0.11 +0.4
7,792 - GFF4377 0.11 -1.0
7,828 + GFF4377 0.13 -0.7
7,828 + GFF4377 0.13 -0.7
7,829 - GFF4377 0.13 +0.2
7,866 + GFF4377 0.15 +0.5
7,866 + GFF4377 0.15 -1.2
7,866 + GFF4377 0.15 -0.3
7,867 - GFF4377 0.15 -0.4
8,059 - GFF4377 0.24 +0.3
8,094 + GFF4377 0.26 -0.2
8,105 + GFF4377 0.27 +0.9
8,105 + GFF4377 0.27 -1.1
8,106 - GFF4377 0.27 -0.5
8,106 - GFF4377 0.27 -0.0
8,175 + GFF4377 0.30 -0.4
8,175 + GFF4377 0.30 +0.4
8,175 + GFF4377 0.30 +0.8
8,175 + GFF4377 0.30 -0.2
8,175 + GFF4377 0.30 -1.1
8,175 + GFF4377 0.30 +0.1
8,175 + GFF4377 0.30 -2.1
8,175 + GFF4377 0.30 +0.9
8,176 - GFF4377 0.30 -0.7
8,176 - GFF4377 0.30 +1.2
8,176 - GFF4377 0.30 -0.5
8,176 - GFF4377 0.30 +0.2
8,176 - GFF4377 0.30 -0.1
8,283 + GFF4377 0.35 -0.1
8,284 - GFF4377 0.35 -0.4
8,343 + GFF4377 0.38 -0.1
8,343 + GFF4377 0.38 -1.6
8,343 + GFF4377 0.38 +0.0
8,343 + GFF4377 0.38 -0.2
8,343 + GFF4377 0.38 -0.3
8,343 + GFF4377 0.38 -0.0
8,343 + GFF4377 0.38 -0.4
8,343 + GFF4377 0.38 +0.0
8,344 - GFF4377 0.38 -0.3
8,344 - GFF4377 0.38 +0.3
8,344 - GFF4377 0.38 +0.4
8,344 - GFF4377 0.38 -0.3
8,344 - GFF4377 0.38 +0.2
8,344 - GFF4377 0.38 -0.5
8,344 - GFF4377 0.38 +0.6
8,344 - GFF4377 0.38 -0.4
8,344 - GFF4377 0.38 -0.0

Or see this region's nucleotide sequence