Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4364 and GFF4365 are separated by 81 nucleotides GFF4365 and GFF4366 overlap by 4 nucleotides GFF4366 and GFF4367 are separated by 7 nucleotides
GFF4364 - Transcriptional regulator, LysR family, at 286,783 to 287,706
GFF4364
GFF4365 - 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33), at 287,788 to 289,794
GFF4365
GFF4366 - BUG/TctC family periplasmic protein, at 289,791 to 290,777
GFF4366
GFF4367 - KEGG: regulator of ribonuclease activity A, at 290,785 to 291,270
GFF4367
Position (kb) 287
288
289
290 Strain fitness (log2 ratio) -1
0
1 at 287.259 kb on - strand, within GFF4364 at 287.330 kb on + strand, within GFF4364 at 287.330 kb on + strand, within GFF4364 at 287.989 kb on + strand, within GFF4365 at 288.502 kb on + strand, within GFF4365 at 288.503 kb on - strand, within GFF4365 at 288.503 kb on - strand, within GFF4365 at 288.605 kb on - strand, within GFF4365 at 288.793 kb on + strand, within GFF4365 at 288.793 kb on + strand, within GFF4365 at 290.115 kb on + strand, within GFF4366 at 290.115 kb on + strand, within GFF4366 at 290.116 kb on - strand, within GFF4366 at 290.238 kb on + strand, within GFF4366 at 290.268 kb on + strand, within GFF4366 at 290.269 kb on - strand, within GFF4366 at 290.498 kb on - strand, within GFF4366 at 290.541 kb on + strand, within GFF4366
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 287,259 - GFF4364 0.52 +1.7 287,330 + GFF4364 0.59 +0.2 287,330 + GFF4364 0.59 -0.4 287,989 + GFF4365 0.10 -0.8 288,502 + GFF4365 0.36 -0.5 288,503 - GFF4365 0.36 +0.8 288,503 - GFF4365 0.36 -1.1 288,605 - GFF4365 0.41 +0.5 288,793 + GFF4365 0.50 -0.7 288,793 + GFF4365 0.50 -1.1 290,115 + GFF4366 0.33 +0.2 290,115 + GFF4366 0.33 +1.7 290,116 - GFF4366 0.33 -0.8 290,238 + GFF4366 0.45 -0.9 290,268 + GFF4366 0.48 +0.9 290,269 - GFF4366 0.48 -0.1 290,498 - GFF4366 0.72 -0.1 290,541 + GFF4366 0.76 -0.4
Or see this region's nucleotide sequence