Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4358 and GFF4359 are separated by 180 nucleotides GFF4359 and GFF4360 are separated by 7 nucleotides GFF4360 and GFF4361 are separated by 99 nucleotides GFF4361 and GFF4362 are separated by 14 nucleotides
GFF4358 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 281,290 to 282,078
GFF4358
GFF4359 - no description, at 282,259 to 282,576
GFF4359
GFF4360 - no description, at 282,584 to 282,853
GFF4360
GFF4361 - Gamma-glutamyltranspeptidase (EC 2.3.2.2) @ Glutathione hydrolase (EC 3.4.19.13), at 282,953 to 284,584
GFF4361
GFF4362 - BUG/TctC family periplasmic protein, at 284,599 to 285,585
GFF4362
Position (kb) 282
283
284
285 Strain fitness (log2 ratio) -1
0
1 at 282.123 kb on + strand at 282.135 kb on + strand at 282.557 kb on + strand at 282.558 kb on - strand at 282.558 kb on - strand at 282.558 kb on - strand at 282.660 kb on + strand, within GFF4360 at 282.661 kb on - strand, within GFF4360 at 283.034 kb on + strand at 283.034 kb on + strand at 283.066 kb on - strand at 283.066 kb on - strand at 283.071 kb on + strand at 283.327 kb on + strand, within GFF4361 at 283.327 kb on + strand, within GFF4361 at 283.401 kb on + strand, within GFF4361 at 283.401 kb on + strand, within GFF4361 at 283.402 kb on - strand, within GFF4361 at 284.041 kb on - strand, within GFF4361 at 284.064 kb on + strand, within GFF4361 at 284.146 kb on - strand, within GFF4361 at 284.386 kb on - strand, within GFF4361 at 284.413 kb on - strand, within GFF4361 at 284.955 kb on - strand, within GFF4362 at 285.021 kb on - strand, within GFF4362 at 285.021 kb on - strand, within GFF4362 at 285.088 kb on - strand, within GFF4362 at 285.261 kb on - strand, within GFF4362 at 285.312 kb on - strand, within GFF4362 at 285.466 kb on + strand, within GFF4362 at 285.510 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 282,123 + -0.4 282,135 + +0.2 282,557 + +0.2 282,558 - -0.6 282,558 - -0.8 282,558 - +1.1 282,660 + GFF4360 0.28 +1.1 282,661 - GFF4360 0.29 +0.4 283,034 + +0.1 283,034 + +1.0 283,066 - +0.0 283,066 - +0.7 283,071 + +0.6 283,327 + GFF4361 0.23 -0.1 283,327 + GFF4361 0.23 -0.3 283,401 + GFF4361 0.27 -0.2 283,401 + GFF4361 0.27 +1.7 283,402 - GFF4361 0.28 -0.5 284,041 - GFF4361 0.67 -0.2 284,064 + GFF4361 0.68 +0.4 284,146 - GFF4361 0.73 -0.1 284,386 - GFF4361 0.88 -1.7 284,413 - GFF4361 0.89 +0.7 284,955 - GFF4362 0.36 +0.3 285,021 - GFF4362 0.43 +0.7 285,021 - GFF4362 0.43 -0.2 285,088 - GFF4362 0.50 -0.1 285,261 - GFF4362 0.67 +0.7 285,312 - GFF4362 0.72 -0.3 285,466 + GFF4362 0.88 +0.9 285,510 - +0.2
Or see this region's nucleotide sequence