Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4335 and GFF4336 are separated by 32 nucleotides GFF4336 and GFF4337 are separated by 46 nucleotides GFF4337 and GFF4338 are separated by 2 nucleotides
GFF4335 - Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.8.1), at 258,400 to 259,554
GFF4335
GFF4336 - BUG/TctC family periplasmic protein, at 259,587 to 260,573
GFF4336
GFF4337 - Electron transfer flavoprotein, alpha subunit, at 260,620 to 261,552
GFF4337
GFF4338 - Electron transfer flavoprotein, beta subunit, at 261,555 to 262,304
GFF4338
Position (kb) 259
260
261 Strain fitness (log2 ratio) -1
0
1 at 259.071 kb on - strand, within GFF4335 at 259.122 kb on - strand, within GFF4335 at 259.651 kb on + strand at 259.814 kb on - strand, within GFF4336 at 259.834 kb on + strand, within GFF4336 at 259.834 kb on + strand, within GFF4336 at 260.009 kb on - strand, within GFF4336 at 260.622 kb on - strand at 260.789 kb on + strand, within GFF4337 at 260.790 kb on - strand, within GFF4337 at 260.790 kb on - strand, within GFF4337 at 261.171 kb on - strand, within GFF4337 at 261.458 kb on - strand, within GFF4337
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 259,071 - GFF4335 0.58 -1.3 259,122 - GFF4335 0.63 -1.3 259,651 + -0.1 259,814 - GFF4336 0.23 -1.1 259,834 + GFF4336 0.25 -0.9 259,834 + GFF4336 0.25 +0.4 260,009 - GFF4336 0.43 -0.6 260,622 - +0.4 260,789 + GFF4337 0.18 -0.1 260,790 - GFF4337 0.18 -0.6 260,790 - GFF4337 0.18 +0.6 261,171 - GFF4337 0.59 -0.7 261,458 - GFF4337 0.90 -0.5
Or see this region's nucleotide sequence