Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4333 and GFF4334 are separated by 29 nucleotides GFF4334 and GFF4335 are separated by 21 nucleotides GFF4335 and GFF4336 are separated by 32 nucleotides
GFF4333 - Transcriptional regulator, LysR family, at 256,646 to 257,551
GFF4333
GFF4334 - Enoyl-CoA hydratase (EC 4.2.1.17), at 257,581 to 258,378
GFF4334
GFF4335 - Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.8.1), at 258,400 to 259,554
GFF4335
GFF4336 - BUG/TctC family periplasmic protein, at 259,587 to 260,573
GFF4336
Position (kb) 258
259
260 Strain fitness (log2 ratio) -1
0
1
2 at 257.453 kb on + strand, within GFF4333 at 257.454 kb on - strand, within GFF4333 at 257.463 kb on - strand at 257.720 kb on + strand, within GFF4334 at 257.925 kb on - strand, within GFF4334 at 258.347 kb on + strand at 258.362 kb on + strand at 259.071 kb on - strand, within GFF4335 at 259.122 kb on - strand, within GFF4335 at 259.651 kb on + strand at 259.814 kb on - strand, within GFF4336 at 259.834 kb on + strand, within GFF4336 at 259.834 kb on + strand, within GFF4336 at 260.009 kb on - strand, within GFF4336
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 257,453 + GFF4333 0.89 +0.4 257,454 - GFF4333 0.89 -0.2 257,463 - +2.2 257,720 + GFF4334 0.17 -0.6 257,925 - GFF4334 0.43 +0.1 258,347 + +0.1 258,362 + -0.3 259,071 - GFF4335 0.58 -1.3 259,122 - GFF4335 0.63 -1.3 259,651 + -0.1 259,814 - GFF4336 0.23 -1.1 259,834 + GFF4336 0.25 -0.9 259,834 + GFF4336 0.25 +0.4 260,009 - GFF4336 0.43 -0.6
Or see this region's nucleotide sequence