Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4324 and GFF4325 overlap by 4 nucleotides GFF4325 and GFF4326 are separated by 82 nucleotides GFF4326 and GFF4327 are separated by 43 nucleotides GFF4327 and GFF4328 are separated by 47 nucleotides
GFF4324 - no description, at 246,247 to 247,281
GFF4324
GFF4325 - hypothetical protein, at 247,278 to 247,781
GFF4325
GFF4326 - Branched-chain amino acid ABC transporter, substrate-binding protein LivJ (TC 3.A.1.4.1), at 247,864 to 249,090
GFF4326
GFF4327 - Enoyl-CoA hydratase (EC 4.2.1.17), at 249,134 to 249,931
GFF4327
GFF4328 - hypothetical protein, at 249,979 to 251,094
GFF4328
Position (kb) 247
248
249
250 Strain fitness (log2 ratio) -1
0
1
2
3 at 247.015 kb on + strand, within GFF4324 at 247.015 kb on + strand, within GFF4324 at 247.016 kb on - strand, within GFF4324 at 247.066 kb on + strand, within GFF4324 at 247.066 kb on + strand, within GFF4324 at 248.023 kb on + strand, within GFF4326 at 248.024 kb on - strand, within GFF4326 at 248.347 kb on + strand, within GFF4326 at 248.348 kb on - strand, within GFF4326 at 248.348 kb on - strand, within GFF4326 at 248.527 kb on + strand, within GFF4326 at 248.527 kb on + strand, within GFF4326 at 248.528 kb on - strand, within GFF4326 at 250.010 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 247,015 + GFF4324 0.74 +0.4 247,015 + GFF4324 0.74 -0.4 247,016 - GFF4324 0.74 +0.5 247,066 + GFF4324 0.79 +0.1 247,066 + GFF4324 0.79 -1.1 248,023 + GFF4326 0.13 -0.7 248,024 - GFF4326 0.13 -0.3 248,347 + GFF4326 0.39 +3.3 248,348 - GFF4326 0.39 -1.3 248,348 - GFF4326 0.39 -0.4 248,527 + GFF4326 0.54 -0.5 248,527 + GFF4326 0.54 -1.0 248,528 - GFF4326 0.54 -0.2 250,010 + -0.6
Or see this region's nucleotide sequence