Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4227 and GFF4228 are separated by 21 nucleotides GFF4228 and GFF4229 overlap by 4 nucleotides GFF4229 and GFF4230 are separated by 66 nucleotides
GFF4227 - Thiamine pyrophosphate-requiring enzymes, at 138,721 to 140,361
GFF4227
GFF4228 - 2-hydroxychromene-2-carboxylate isomerase, at 140,383 to 141,003
GFF4228
GFF4229 - Transcriptional regulator, at 141,000 to 141,641
GFF4229
GFF4230 - Transcriptional regulator of pyridoxine metabolism / Pyridoxamine phosphate aminotransferase (EC 2.6.1.54), at 141,708 to 143,018
GFF4230
Position (kb) 140
141
142 Strain fitness (log2 ratio) -1
0
1
2
3 at 139.618 kb on + strand, within GFF4227 at 139.618 kb on + strand, within GFF4227 at 139.618 kb on + strand, within GFF4227 at 139.619 kb on - strand, within GFF4227 at 139.619 kb on - strand, within GFF4227 at 140.122 kb on + strand, within GFF4227 at 140.405 kb on - strand at 140.405 kb on - strand at 140.407 kb on + strand at 140.407 kb on + strand at 140.516 kb on - strand, within GFF4228 at 140.545 kb on + strand, within GFF4228 at 140.854 kb on + strand, within GFF4228 at 140.855 kb on - strand, within GFF4228 at 140.855 kb on - strand, within GFF4228 at 140.864 kb on - strand, within GFF4228 at 140.908 kb on + strand, within GFF4228 at 140.909 kb on - strand, within GFF4228 at 141.002 kb on - strand at 141.184 kb on + strand, within GFF4229 at 141.185 kb on - strand, within GFF4229 at 141.278 kb on - strand, within GFF4229 at 141.278 kb on - strand, within GFF4229 at 141.278 kb on - strand, within GFF4229 at 141.328 kb on + strand, within GFF4229 at 141.387 kb on + strand, within GFF4229 at 141.391 kb on + strand, within GFF4229 at 141.392 kb on - strand, within GFF4229 at 141.637 kb on + strand at 141.637 kb on + strand at 141.637 kb on + strand at 141.637 kb on + strand at 141.638 kb on - strand at 141.638 kb on - strand at 141.638 kb on - strand at 141.638 kb on - strand at 141.638 kb on - strand at 141.638 kb on - strand at 141.638 kb on - strand at 141.638 kb on - strand at 141.638 kb on - strand at 141.638 kb on - strand at 141.638 kb on - strand at 141.638 kb on - strand at 141.638 kb on - strand at 141.666 kb on + strand at 141.842 kb on + strand, within GFF4230 at 141.858 kb on + strand, within GFF4230 at 141.859 kb on - strand, within GFF4230 at 141.903 kb on + strand, within GFF4230 at 141.904 kb on - strand, within GFF4230
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 139,618 + GFF4227 0.55 -0.3 139,618 + GFF4227 0.55 +1.0 139,618 + GFF4227 0.55 -0.3 139,619 - GFF4227 0.55 +0.5 139,619 - GFF4227 0.55 +0.4 140,122 + GFF4227 0.85 -0.0 140,405 - -0.4 140,405 - -0.3 140,407 + -0.6 140,407 + +3.3 140,516 - GFF4228 0.21 +0.6 140,545 + GFF4228 0.26 -0.7 140,854 + GFF4228 0.76 +0.2 140,855 - GFF4228 0.76 +0.3 140,855 - GFF4228 0.76 -0.5 140,864 - GFF4228 0.77 +0.4 140,908 + GFF4228 0.85 +0.4 140,909 - GFF4228 0.85 +2.1 141,002 - +0.3 141,184 + GFF4229 0.29 +0.1 141,185 - GFF4229 0.29 -0.1 141,278 - GFF4229 0.43 -0.3 141,278 - GFF4229 0.43 -0.6 141,278 - GFF4229 0.43 -0.6 141,328 + GFF4229 0.51 +0.7 141,387 + GFF4229 0.60 +1.0 141,391 + GFF4229 0.61 +0.2 141,392 - GFF4229 0.61 +0.6 141,637 + -1.0 141,637 + -0.5 141,637 + -0.2 141,637 + -0.1 141,638 - +0.2 141,638 - +0.1 141,638 - -1.2 141,638 - +0.5 141,638 - -0.3 141,638 - +0.1 141,638 - -0.7 141,638 - +0.4 141,638 - -0.3 141,638 - +0.3 141,638 - -0.4 141,638 - -0.4 141,638 - -0.6 141,666 + -0.0 141,842 + GFF4230 0.10 -0.6 141,858 + GFF4230 0.11 -0.2 141,859 - GFF4230 0.12 -0.1 141,903 + GFF4230 0.15 +0.2 141,904 - GFF4230 0.15 -0.3
Or see this region's nucleotide sequence