Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4222 and GFF4223 are separated by 34 nucleotides GFF4223 and GFF4225 are separated by 83 nucleotides GFF4225 and GFF4224 overlap by 2 nucleotides GFF4224 and GFF4226 are separated by 54 nucleotides
GFF4222 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 134,574 to 135,767
GFF4222
GFF4223 - BUG/TctC family periplasmic protein, at 135,802 to 136,788
GFF4223
GFF4225 - no description, at 136,872 to 137,039
GFF4225
GFF4224 - Transcriptional regulator, AcrR family, at 137,038 to 137,670
GFF4224
GFF4226 - Acryloyl-CoA reductase AcuI/YhdH (EC 1.3.1.84), at 137,725 to 138,714
GFF4226
Position (kb) 135
136
137 Strain fitness (log2 ratio) -2
-1
0
1
2 at 134.959 kb on + strand, within GFF4222 at 134.960 kb on - strand, within GFF4222 at 135.550 kb on + strand, within GFF4222 at 135.550 kb on + strand, within GFF4222 at 135.551 kb on - strand, within GFF4222 at 135.551 kb on - strand, within GFF4222 at 135.637 kb on + strand, within GFF4222 at 135.638 kb on - strand, within GFF4222 at 135.638 kb on - strand, within GFF4222 at 135.638 kb on - strand, within GFF4222 at 135.758 kb on - strand at 136.230 kb on - strand, within GFF4223 at 136.230 kb on - strand, within GFF4223 at 136.423 kb on + strand, within GFF4223 at 136.423 kb on + strand, within GFF4223 at 136.423 kb on + strand, within GFF4223 at 136.423 kb on + strand, within GFF4223 at 136.424 kb on - strand, within GFF4223 at 136.424 kb on - strand, within GFF4223 at 136.424 kb on - strand, within GFF4223 at 136.424 kb on - strand, within GFF4223 at 136.424 kb on - strand, within GFF4223 at 136.427 kb on + strand, within GFF4223 at 136.427 kb on + strand, within GFF4223 at 136.427 kb on + strand, within GFF4223 at 136.704 kb on - strand at 136.772 kb on + strand at 136.773 kb on - strand at 136.773 kb on - strand at 136.831 kb on + strand at 137.090 kb on - strand at 137.090 kb on - strand at 137.209 kb on + strand, within GFF4224 at 137.209 kb on + strand, within GFF4224 at 137.209 kb on + strand, within GFF4224 at 137.209 kb on + strand, within GFF4224 at 137.213 kb on - strand, within GFF4224 at 137.215 kb on + strand, within GFF4224 at 137.216 kb on - strand, within GFF4224 at 137.216 kb on - strand, within GFF4224 at 137.260 kb on + strand, within GFF4224 at 137.269 kb on + strand, within GFF4224 at 137.438 kb on - strand, within GFF4224
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 134,959 + GFF4222 0.32 -0.0 134,960 - GFF4222 0.32 +2.1 135,550 + GFF4222 0.82 -0.2 135,550 + GFF4222 0.82 -0.7 135,551 - GFF4222 0.82 -0.9 135,551 - GFF4222 0.82 -0.2 135,637 + GFF4222 0.89 +0.1 135,638 - GFF4222 0.89 -0.7 135,638 - GFF4222 0.89 +0.2 135,638 - GFF4222 0.89 +0.0 135,758 - +0.2 136,230 - GFF4223 0.43 -0.5 136,230 - GFF4223 0.43 +0.4 136,423 + GFF4223 0.63 +0.7 136,423 + GFF4223 0.63 -0.3 136,423 + GFF4223 0.63 -1.6 136,423 + GFF4223 0.63 +0.7 136,424 - GFF4223 0.63 -1.6 136,424 - GFF4223 0.63 -1.1 136,424 - GFF4223 0.63 -0.6 136,424 - GFF4223 0.63 -1.8 136,424 - GFF4223 0.63 -0.4 136,427 + GFF4223 0.63 -1.0 136,427 + GFF4223 0.63 -0.4 136,427 + GFF4223 0.63 +1.1 136,704 - -0.4 136,772 + +0.4 136,773 - +0.4 136,773 - -1.4 136,831 + +0.4 137,090 - -0.3 137,090 - -1.0 137,209 + GFF4224 0.27 -0.3 137,209 + GFF4224 0.27 -0.3 137,209 + GFF4224 0.27 +0.1 137,209 + GFF4224 0.27 -0.1 137,213 - GFF4224 0.28 -0.5 137,215 + GFF4224 0.28 -1.5 137,216 - GFF4224 0.28 +0.3 137,216 - GFF4224 0.28 -0.9 137,260 + GFF4224 0.35 -0.8 137,269 + GFF4224 0.36 -1.1 137,438 - GFF4224 0.63 -0.1
Or see this region's nucleotide sequence