Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4158 and GFF4159 overlap by 4 nucleotides GFF4159 and GFF4160 overlap by 4 nucleotides GFF4160 and GFF4161 overlap by 17 nucleotides GFF4161 and GFF4162 are separated by 11 nucleotides
GFF4158 - hypothetical protein, at 63,823 to 64,251
GFF4158
GFF4159 - no description, at 64,248 to 64,967
GFF4159
GFF4160 - Demethylmenaquinone methyltransferase-like protein, at 64,964 to 65,719
GFF4160
GFF4161 - hypothetical protein, at 65,703 to 66,131
GFF4161
GFF4162 - Aldehyde dehydrogenase B (EC 1.2.1.22), at 66,143 to 67,672
GFF4162
Position (kb) 64
65
66 Strain fitness (log2 ratio) -1
0
1 at 64.057 kb on + strand, within GFF4158 at 64.057 kb on + strand, within GFF4158 at 64.057 kb on + strand, within GFF4158 at 64.058 kb on - strand, within GFF4158 at 64.058 kb on - strand, within GFF4158 at 64.058 kb on - strand, within GFF4158 at 64.058 kb on - strand, within GFF4158 at 64.058 kb on - strand, within GFF4158 at 64.058 kb on - strand, within GFF4158 at 64.561 kb on + strand, within GFF4159 at 64.562 kb on + strand, within GFF4159 at 64.563 kb on - strand, within GFF4159 at 64.563 kb on - strand, within GFF4159 at 65.069 kb on + strand, within GFF4160 at 65.070 kb on - strand, within GFF4160 at 65.126 kb on + strand, within GFF4160 at 65.126 kb on + strand, within GFF4160 at 65.177 kb on + strand, within GFF4160 at 65.178 kb on - strand, within GFF4160 at 65.474 kb on + strand, within GFF4160 at 65.474 kb on + strand, within GFF4160 at 65.475 kb on - strand, within GFF4160 at 65.475 kb on - strand, within GFF4160 at 65.574 kb on - strand, within GFF4160 at 65.574 kb on - strand, within GFF4160 at 65.657 kb on + strand at 65.814 kb on + strand, within GFF4161 at 65.922 kb on + strand, within GFF4161 at 65.923 kb on - strand, within GFF4161 at 65.941 kb on - strand, within GFF4161 at 65.941 kb on - strand, within GFF4161 at 65.947 kb on - strand, within GFF4161 at 65.985 kb on + strand, within GFF4161 at 66.054 kb on + strand, within GFF4161 at 66.054 kb on + strand, within GFF4161 at 66.055 kb on - strand, within GFF4161 at 66.073 kb on - strand, within GFF4161 at 66.073 kb on - strand, within GFF4161 at 66.314 kb on + strand, within GFF4162 at 66.315 kb on - strand, within GFF4162 at 66.315 kb on - strand, within GFF4162 at 66.546 kb on - strand, within GFF4162 at 66.546 kb on - strand, within GFF4162 at 66.587 kb on + strand, within GFF4162 at 66.588 kb on - strand, within GFF4162 at 66.588 kb on - strand, within GFF4162 at 66.632 kb on + strand, within GFF4162 at 66.632 kb on + strand, within GFF4162
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 64,057 + GFF4158 0.55 +1.1 64,057 + GFF4158 0.55 -0.1 64,057 + GFF4158 0.55 -0.3 64,058 - GFF4158 0.55 +0.4 64,058 - GFF4158 0.55 +0.3 64,058 - GFF4158 0.55 -0.5 64,058 - GFF4158 0.55 +0.9 64,058 - GFF4158 0.55 -1.5 64,058 - GFF4158 0.55 -0.7 64,561 + GFF4159 0.43 -0.6 64,562 + GFF4159 0.44 -0.2 64,563 - GFF4159 0.44 -0.7 64,563 - GFF4159 0.44 -0.6 65,069 + GFF4160 0.14 +0.5 65,070 - GFF4160 0.14 -0.7 65,126 + GFF4160 0.21 -0.4 65,126 + GFF4160 0.21 -1.0 65,177 + GFF4160 0.28 -0.9 65,178 - GFF4160 0.28 -0.5 65,474 + GFF4160 0.67 -0.4 65,474 + GFF4160 0.67 -0.3 65,475 - GFF4160 0.68 +0.9 65,475 - GFF4160 0.68 -0.6 65,574 - GFF4160 0.81 -0.3 65,574 - GFF4160 0.81 -0.3 65,657 + -0.6 65,814 + GFF4161 0.26 -0.2 65,922 + GFF4161 0.51 -0.2 65,923 - GFF4161 0.51 +0.8 65,941 - GFF4161 0.55 -0.3 65,941 - GFF4161 0.55 +0.6 65,947 - GFF4161 0.57 -0.6 65,985 + GFF4161 0.66 -0.7 66,054 + GFF4161 0.82 -1.3 66,054 + GFF4161 0.82 -0.2 66,055 - GFF4161 0.82 -0.9 66,073 - GFF4161 0.86 +0.8 66,073 - GFF4161 0.86 +0.2 66,314 + GFF4162 0.11 +0.1 66,315 - GFF4162 0.11 -0.1 66,315 - GFF4162 0.11 -0.4 66,546 - GFF4162 0.26 -0.9 66,546 - GFF4162 0.26 +0.0 66,587 + GFF4162 0.29 +0.2 66,588 - GFF4162 0.29 +0.3 66,588 - GFF4162 0.29 -0.9 66,632 + GFF4162 0.32 -0.5 66,632 + GFF4162 0.32 +1.0
Or see this region's nucleotide sequence