Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4136 and GFF4137 are separated by 206 nucleotides GFF4137 and GFF4138 are separated by 46 nucleotides
GFF4136 - hypothetical protein, at 43,121 to 46,051
GFF4136
GFF4137 - Methionine ABC transporter substrate-binding protein, at 46,258 to 47,070
GFF4137
GFF4138 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 47,117 to 48,709
GFF4138
Position (kb) 46
47
48 Strain fitness (log2 ratio) -1
0
1 at 46.003 kb on - strand at 46.168 kb on + strand at 46.168 kb on + strand at 46.168 kb on + strand at 46.168 kb on + strand at 46.168 kb on + strand at 46.168 kb on + strand at 46.169 kb on - strand at 46.169 kb on - strand at 46.230 kb on + strand at 46.231 kb on - strand at 46.457 kb on - strand, within GFF4137 at 46.457 kb on - strand, within GFF4137 at 46.457 kb on - strand, within GFF4137 at 47.041 kb on + strand at 47.041 kb on + strand at 47.096 kb on - strand at 47.399 kb on + strand, within GFF4138 at 47.399 kb on + strand, within GFF4138 at 47.399 kb on + strand, within GFF4138 at 47.672 kb on + strand, within GFF4138 at 47.973 kb on - strand, within GFF4138 at 47.973 kb on - strand, within GFF4138
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 46,003 - +0.1 46,168 + +0.1 46,168 + -0.5 46,168 + +0.4 46,168 + -0.1 46,168 + -0.2 46,168 + -0.9 46,169 - -0.3 46,169 - +0.7 46,230 + +0.2 46,231 - -1.3 46,457 - GFF4137 0.24 -1.4 46,457 - GFF4137 0.24 -0.8 46,457 - GFF4137 0.24 -1.2 47,041 + +0.3 47,041 + -1.5 47,096 - +0.2 47,399 + GFF4138 0.18 +0.2 47,399 + GFF4138 0.18 -1.2 47,399 + GFF4138 0.18 -0.6 47,672 + GFF4138 0.35 -0.7 47,973 - GFF4138 0.54 -0.0 47,973 - GFF4138 0.54 +0.2
Or see this region's nucleotide sequence