Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4091 and GFF4092 are separated by 59 nucleotides GFF4092 and GFF4093 are separated by 39 nucleotides GFF4093 and GFF4094 are separated by 109 nucleotides
GFF4091 - Glutamate/aspartate ABC transporter, ATP-binding protein GltL (TC 3.A.1.3.4), at 303,301 to 304,044
GFF4091
GFF4092 - Copper tolerance protein, at 304,104 to 304,604
GFF4092
GFF4093 - no description, at 304,644 to 304,946
GFF4093
GFF4094 - no description, at 305,056 to 306,099
GFF4094
Position (kb) 304
305 Strain fitness (log2 ratio) -2
-1
0
1 at 304.283 kb on + strand, within GFF4092 at 304.284 kb on - strand, within GFF4092 at 304.455 kb on + strand, within GFF4092 at 304.551 kb on + strand, within GFF4092 at 304.646 kb on - strand at 304.655 kb on - strand at 304.814 kb on - strand, within GFF4093 at 304.828 kb on + strand, within GFF4093 at 304.906 kb on + strand, within GFF4093 at 304.907 kb on - strand, within GFF4093 at 304.935 kb on - strand at 305.059 kb on + strand at 305.060 kb on - strand at 305.060 kb on - strand at 305.060 kb on - strand at 305.073 kb on + strand at 305.073 kb on + strand at 305.074 kb on - strand at 305.157 kb on - strand at 305.193 kb on - strand, within GFF4094 at 305.231 kb on + strand, within GFF4094 at 305.231 kb on + strand, within GFF4094 at 305.232 kb on - strand, within GFF4094 at 305.369 kb on + strand, within GFF4094 at 305.369 kb on + strand, within GFF4094 at 305.369 kb on + strand, within GFF4094 at 305.370 kb on - strand, within GFF4094 at 305.394 kb on - strand, within GFF4094 at 305.394 kb on - strand, within GFF4094 at 305.543 kb on + strand, within GFF4094 at 305.849 kb on + strand, within GFF4094 at 305.849 kb on + strand, within GFF4094 at 305.850 kb on - strand, within GFF4094 at 305.864 kb on + strand, within GFF4094 at 305.936 kb on + strand, within GFF4094 at 305.936 kb on + strand, within GFF4094 at 305.936 kb on + strand, within GFF4094 at 305.936 kb on + strand, within GFF4094 at 305.937 kb on - strand, within GFF4094 at 305.937 kb on - strand, within GFF4094 at 305.937 kb on - strand, within GFF4094 at 305.937 kb on - strand, within GFF4094
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 304,283 + GFF4092 0.36 +0.7 304,284 - GFF4092 0.36 +0.0 304,455 + GFF4092 0.70 -0.7 304,551 + GFF4092 0.89 -0.7 304,646 - -0.5 304,655 - -0.2 304,814 - GFF4093 0.56 -0.2 304,828 + GFF4093 0.61 +0.2 304,906 + GFF4093 0.86 +0.9 304,907 - GFF4093 0.87 +0.4 304,935 - -1.5 305,059 + -2.5 305,060 - +1.7 305,060 - +0.0 305,060 - +0.0 305,073 + +1.1 305,073 + -0.2 305,074 - -0.2 305,157 - +0.8 305,193 - GFF4094 0.13 +1.1 305,231 + GFF4094 0.17 -1.5 305,231 + GFF4094 0.17 +0.2 305,232 - GFF4094 0.17 -0.2 305,369 + GFF4094 0.30 -0.9 305,369 + GFF4094 0.30 +0.1 305,369 + GFF4094 0.30 -0.6 305,370 - GFF4094 0.30 +0.7 305,394 - GFF4094 0.32 -0.3 305,394 - GFF4094 0.32 -0.4 305,543 + GFF4094 0.47 -0.3 305,849 + GFF4094 0.76 -0.2 305,849 + GFF4094 0.76 +0.1 305,850 - GFF4094 0.76 -1.5 305,864 + GFF4094 0.77 +0.2 305,936 + GFF4094 0.84 +0.2 305,936 + GFF4094 0.84 +0.1 305,936 + GFF4094 0.84 -0.7 305,936 + GFF4094 0.84 +1.7 305,937 - GFF4094 0.84 +0.4 305,937 - GFF4094 0.84 -0.8 305,937 - GFF4094 0.84 -0.2 305,937 - GFF4094 0.84 +0.3
Or see this region's nucleotide sequence