Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4073 and GFF4074 are separated by 35 nucleotides GFF4074 and GFF4075 are separated by 46 nucleotides GFF4075 and GFF4076 are separated by 75 nucleotides
GFF4073 - Copper tolerance protein, at 286,690 to 288,114
GFF4073
GFF4074 - Multicopper oxidase, at 288,150 to 289,565
GFF4074
GFF4075 - Copper tolerance protein, at 289,612 to 290,103
GFF4075
GFF4076 - hypothetical protein, at 290,179 to 290,553
GFF4076
Position (kb) 288
289
290 Strain fitness (log2 ratio) -1
0
1 at 287.230 kb on + strand, within GFF4073 at 287.230 kb on + strand, within GFF4073 at 287.231 kb on - strand, within GFF4073 at 287.812 kb on + strand, within GFF4073 at 288.309 kb on + strand, within GFF4074 at 288.660 kb on + strand, within GFF4074 at 288.661 kb on - strand, within GFF4074 at 289.026 kb on + strand, within GFF4074 at 289.026 kb on + strand, within GFF4074 at 289.218 kb on + strand, within GFF4074 at 289.218 kb on + strand, within GFF4074 at 289.219 kb on - strand, within GFF4074 at 289.219 kb on - strand, within GFF4074 at 289.219 kb on - strand, within GFF4074 at 289.219 kb on - strand, within GFF4074 at 289.383 kb on + strand, within GFF4074 at 289.525 kb on + strand at 289.526 kb on - strand at 289.913 kb on - strand, within GFF4075
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 287,230 + GFF4073 0.38 +1.3 287,230 + GFF4073 0.38 +0.1 287,231 - GFF4073 0.38 -0.2 287,812 + GFF4073 0.79 -1.3 288,309 + GFF4074 0.11 -1.0 288,660 + GFF4074 0.36 -0.7 288,661 - GFF4074 0.36 -1.6 289,026 + GFF4074 0.62 +0.5 289,026 + GFF4074 0.62 -0.9 289,218 + GFF4074 0.75 -1.7 289,218 + GFF4074 0.75 -0.3 289,219 - GFF4074 0.75 -0.0 289,219 - GFF4074 0.75 -1.3 289,219 - GFF4074 0.75 +0.1 289,219 - GFF4074 0.75 +0.4 289,383 + GFF4074 0.87 -0.2 289,525 + +0.5 289,526 - -0.4 289,913 - GFF4075 0.61 +0.1
Or see this region's nucleotide sequence