Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4041 and GFF4042 are separated by 514 nucleotides GFF4042 and GFF4043 overlap by 4 nucleotides
GFF4041 - Lipid A phosphoethanolamine transferase, putative, at 251,164 to 252,579
GFF4041
GFF4042 - Copper-sensing two-component system response regulator CusR, at 253,094 to 253,777
GFF4042
GFF4043 - Copper sensory histidine kinase CusS, at 253,774 to 255,102
GFF4043
Position (kb) 253
254 Strain fitness (log2 ratio) -1
0
1
2 at 252.154 kb on - strand, within GFF4041 at 252.221 kb on + strand, within GFF4041 at 252.236 kb on + strand, within GFF4041 at 252.236 kb on + strand, within GFF4041 at 252.236 kb on + strand, within GFF4041 at 252.237 kb on - strand, within GFF4041 at 252.237 kb on - strand, within GFF4041 at 252.237 kb on - strand, within GFF4041 at 252.237 kb on - strand, within GFF4041 at 252.237 kb on - strand, within GFF4041 at 252.303 kb on - strand, within GFF4041 at 252.309 kb on + strand, within GFF4041 at 252.309 kb on + strand, within GFF4041 at 252.551 kb on + strand at 252.551 kb on + strand at 252.552 kb on - strand at 252.552 kb on - strand at 252.583 kb on + strand at 252.584 kb on - strand at 252.746 kb on - strand at 252.746 kb on - strand at 252.981 kb on - strand at 252.981 kb on - strand at 252.990 kb on + strand at 252.990 kb on + strand at 252.990 kb on + strand at 252.990 kb on + strand at 252.991 kb on - strand at 253.057 kb on + strand at 253.057 kb on + strand at 253.137 kb on - strand at 253.137 kb on - strand at 253.226 kb on + strand, within GFF4042 at 253.227 kb on - strand, within GFF4042 at 253.383 kb on - strand, within GFF4042 at 253.383 kb on - strand, within GFF4042 at 253.747 kb on - strand at 253.747 kb on - strand at 253.915 kb on + strand, within GFF4043 at 253.918 kb on - strand, within GFF4043 at 254.054 kb on - strand, within GFF4043 at 254.054 kb on - strand, within GFF4043
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 252,154 - GFF4041 0.70 -0.9 252,221 + GFF4041 0.75 +0.1 252,236 + GFF4041 0.76 -0.5 252,236 + GFF4041 0.76 -1.6 252,236 + GFF4041 0.76 +0.1 252,237 - GFF4041 0.76 -0.5 252,237 - GFF4041 0.76 +1.1 252,237 - GFF4041 0.76 -0.2 252,237 - GFF4041 0.76 -0.5 252,237 - GFF4041 0.76 -0.9 252,303 - GFF4041 0.80 -0.9 252,309 + GFF4041 0.81 -0.2 252,309 + GFF4041 0.81 +0.4 252,551 + -0.7 252,551 + -0.4 252,552 - -0.6 252,552 - +0.3 252,583 + -0.6 252,584 - +0.1 252,746 - -0.6 252,746 - -0.6 252,981 - -0.3 252,981 - -1.6 252,990 + -0.3 252,990 + +0.2 252,990 + +0.2 252,990 + +0.1 252,991 - +0.2 253,057 + -0.2 253,057 + +0.3 253,137 - -1.1 253,137 - -0.5 253,226 + GFF4042 0.19 -0.7 253,227 - GFF4042 0.19 -1.2 253,383 - GFF4042 0.42 +0.5 253,383 - GFF4042 0.42 +0.5 253,747 - -0.1 253,747 - -0.2 253,915 + GFF4043 0.11 +0.4 253,918 - GFF4043 0.11 +2.3 254,054 - GFF4043 0.21 +1.2 254,054 - GFF4043 0.21 -0.3
Or see this region's nucleotide sequence