Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4037 and GFF4038 are separated by 17 nucleotides GFF4038 and GFF4039 overlap by 4 nucleotides
GFF4037 - CzcABC family efflux RND transporter, transmembrane protein, at 244,591 to 247,716
GFF4037
GFF4038 - Cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein, CzcB family, at 247,734 to 248,951
GFF4038
GFF4039 - Heavy metal RND efflux outer membrane protein, CzcC family, at 248,948 to 250,267
GFF4039
Position (kb) 247
248
249 Strain fitness (log2 ratio) -1
0
1
2 at 246.944 kb on + strand, within GFF4037 at 246.945 kb on - strand, within GFF4037 at 247.343 kb on + strand, within GFF4037 at 247.406 kb on + strand at 247.567 kb on - strand at 247.568 kb on + strand at 247.569 kb on - strand at 247.572 kb on + strand at 247.573 kb on - strand at 247.700 kb on - strand at 247.783 kb on + strand at 247.783 kb on + strand at 247.783 kb on + strand at 247.883 kb on - strand, within GFF4038 at 248.101 kb on + strand, within GFF4038 at 248.438 kb on - strand, within GFF4038 at 248.488 kb on + strand, within GFF4038 at 248.489 kb on - strand, within GFF4038 at 248.880 kb on - strand at 249.488 kb on - strand, within GFF4039 at 249.804 kb on + strand, within GFF4039 at 249.804 kb on + strand, within GFF4039 at 249.805 kb on - strand, within GFF4039
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 246,944 + GFF4037 0.75 -0.1 246,945 - GFF4037 0.75 -0.6 247,343 + GFF4037 0.88 -0.7 247,406 + -0.4 247,567 - +2.3 247,568 + +1.5 247,569 - +1.3 247,572 + -0.0 247,573 - +0.1 247,700 - -0.0 247,783 + -0.5 247,783 + +0.0 247,783 + -1.1 247,883 - GFF4038 0.12 -0.9 248,101 + GFF4038 0.30 -0.6 248,438 - GFF4038 0.58 -1.0 248,488 + GFF4038 0.62 +0.1 248,489 - GFF4038 0.62 -1.2 248,880 - -1.1 249,488 - GFF4039 0.41 -0.1 249,804 + GFF4039 0.65 +2.7 249,804 + GFF4039 0.65 +0.2 249,805 - GFF4039 0.65 -0.7
Or see this region's nucleotide sequence