Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3975 and GFF3976 overlap by 4 nucleotides GFF3976 and GFF3977 are separated by 49 nucleotides GFF3977 and GFF3978 are separated by 1 nucleotides
GFF3975 - Metal-dependent hydrolase, at 178,587 to 179,399
GFF3975
GFF3976 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 179,396 to 180,130
GFF3976
GFF3977 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 180,180 to 181,346
GFF3977
GFF3978 - ABC-type branched-chain amino acid transport systems, periplasmic component, at 181,348 to 182,493
GFF3978
Position (kb) 180
181
182 Strain fitness (log2 ratio) -2
-1
0
1 at 179.212 kb on - strand, within GFF3975 at 179.212 kb on - strand, within GFF3975 at 179.230 kb on - strand, within GFF3975 at 179.241 kb on + strand, within GFF3975 at 179.241 kb on + strand, within GFF3975 at 179.242 kb on - strand, within GFF3975 at 179.242 kb on - strand, within GFF3975 at 179.242 kb on - strand, within GFF3975 at 179.244 kb on + strand, within GFF3975 at 179.244 kb on + strand, within GFF3975 at 179.245 kb on - strand, within GFF3975 at 179.245 kb on - strand, within GFF3975 at 179.245 kb on - strand, within GFF3975 at 179.245 kb on - strand, within GFF3975 at 179.825 kb on + strand, within GFF3976 at 179.825 kb on + strand, within GFF3976 at 179.825 kb on + strand, within GFF3976 at 179.863 kb on + strand, within GFF3976 at 179.943 kb on - strand, within GFF3976 at 180.089 kb on + strand at 180.090 kb on - strand at 180.090 kb on - strand at 180.090 kb on - strand at 180.090 kb on - strand at 180.325 kb on - strand, within GFF3977 at 180.354 kb on + strand, within GFF3977 at 180.355 kb on - strand, within GFF3977 at 180.708 kb on + strand, within GFF3977 at 180.898 kb on - strand, within GFF3977 at 180.913 kb on - strand, within GFF3977 at 180.913 kb on - strand, within GFF3977 at 181.111 kb on - strand, within GFF3977 at 181.111 kb on - strand, within GFF3977 at 181.134 kb on + strand, within GFF3977 at 181.255 kb on - strand at 181.859 kb on + strand, within GFF3978 at 181.859 kb on + strand, within GFF3978 at 181.860 kb on - strand, within GFF3978 at 181.860 kb on - strand, within GFF3978 at 181.864 kb on + strand, within GFF3978 at 182.029 kb on + strand, within GFF3978 at 182.030 kb on - strand, within GFF3978 at 182.030 kb on - strand, within GFF3978 at 182.053 kb on + strand, within GFF3978 at 182.054 kb on - strand, within GFF3978 at 182.069 kb on - strand, within GFF3978 at 182.272 kb on + strand, within GFF3978 at 182.272 kb on + strand, within GFF3978 at 182.273 kb on - strand, within GFF3978 at 182.281 kb on + strand, within GFF3978
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 179,212 - GFF3975 0.77 -0.7 179,212 - GFF3975 0.77 +1.7 179,230 - GFF3975 0.79 +0.4 179,241 + GFF3975 0.80 -0.9 179,241 + GFF3975 0.80 -1.0 179,242 - GFF3975 0.81 +0.1 179,242 - GFF3975 0.81 -0.5 179,242 - GFF3975 0.81 -0.7 179,244 + GFF3975 0.81 +1.7 179,244 + GFF3975 0.81 +0.0 179,245 - GFF3975 0.81 -2.0 179,245 - GFF3975 0.81 +1.3 179,245 - GFF3975 0.81 +0.7 179,245 - GFF3975 0.81 -2.3 179,825 + GFF3976 0.58 -0.3 179,825 + GFF3976 0.58 -1.3 179,825 + GFF3976 0.58 -0.7 179,863 + GFF3976 0.64 -0.1 179,943 - GFF3976 0.74 -0.3 180,089 + +0.7 180,090 - +0.1 180,090 - +0.3 180,090 - +0.2 180,090 - -0.0 180,325 - GFF3977 0.12 +0.0 180,354 + GFF3977 0.15 +0.0 180,355 - GFF3977 0.15 -0.2 180,708 + GFF3977 0.45 +1.4 180,898 - GFF3977 0.62 -0.3 180,913 - GFF3977 0.63 +1.4 180,913 - GFF3977 0.63 -0.0 181,111 - GFF3977 0.80 +0.0 181,111 - GFF3977 0.80 +0.2 181,134 + GFF3977 0.82 -0.3 181,255 - -0.4 181,859 + GFF3978 0.45 -0.4 181,859 + GFF3978 0.45 -0.6 181,860 - GFF3978 0.45 +0.5 181,860 - GFF3978 0.45 -0.1 181,864 + GFF3978 0.45 +0.4 182,029 + GFF3978 0.59 -0.1 182,030 - GFF3978 0.60 +0.3 182,030 - GFF3978 0.60 -0.0 182,053 + GFF3978 0.62 +0.7 182,054 - GFF3978 0.62 -0.7 182,069 - GFF3978 0.63 -1.1 182,272 + GFF3978 0.81 -1.1 182,272 + GFF3978 0.81 -0.6 182,273 - GFF3978 0.81 +1.7 182,281 + GFF3978 0.81 +0.3
Or see this region's nucleotide sequence