Strain Fitness in Variovorax sp. SCN45 around GFF3954

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3952 and GFF3953 are separated by 168 nucleotidesGFF3953 and GFF3954 are separated by 52 nucleotidesGFF3954 and GFF3955 are separated by 25 nucleotides GFF3952 - LSU ribosomal protein L19p, at 153,448 to 153,828 GFF3952 GFF3953 - Uncharacterized Nudix hydrolase NudL, at 153,997 to 154,716 GFF3953 GFF3954 - Similar to cobalamin biosynthesis protein CbiB, at 154,769 to 155,770 GFF3954 GFF3955 - Histidinol-phosphate aminotransferase (EC 2.6.1.9), at 155,796 to 156,890 GFF3955 Position (kb) 154 155 156Strain fitness (log2 ratio) -2 -1 0 1 2at 153.780 kb on + strand, within GFF3952at 153.780 kb on + strand, within GFF3952at 153.780 kb on + strand, within GFF3952at 153.826 kb on + strandat 153.826 kb on + strandat 153.827 kb on - strandat 153.827 kb on - strandat 153.829 kb on + strandat 153.829 kb on + strandat 153.829 kb on + strandat 153.829 kb on + strandat 153.829 kb on + strandat 153.829 kb on + strandat 153.829 kb on + strandat 153.829 kb on + strandat 153.830 kb on - strandat 153.830 kb on - strandat 153.830 kb on - strandat 153.843 kb on - strandat 153.928 kb on + strandat 153.929 kb on - strandat 153.935 kb on + strandat 153.935 kb on + strandat 153.935 kb on + strandat 153.935 kb on + strandat 153.936 kb on - strandat 153.936 kb on - strandat 153.936 kb on - strandat 153.936 kb on - strandat 153.936 kb on - strandat 153.936 kb on - strandat 153.936 kb on - strandat 153.945 kb on - strandat 153.945 kb on - strandat 154.284 kb on + strand, within GFF3953at 154.284 kb on + strand, within GFF3953at 154.284 kb on + strand, within GFF3953at 154.284 kb on + strand, within GFF3953at 154.284 kb on + strand, within GFF3953at 154.285 kb on - strand, within GFF3953at 154.285 kb on - strand, within GFF3953at 154.285 kb on - strand, within GFF3953at 154.438 kb on + strand, within GFF3953at 154.438 kb on + strand, within GFF3953at 154.438 kb on + strand, within GFF3953at 154.439 kb on - strand, within GFF3953at 154.439 kb on - strand, within GFF3953at 154.516 kb on + strand, within GFF3953at 154.621 kb on + strand, within GFF3953at 154.621 kb on + strand, within GFF3953at 154.621 kb on + strand, within GFF3953at 154.621 kb on + strand, within GFF3953at 154.622 kb on - strand, within GFF3953at 154.697 kb on - strandat 154.697 kb on - strandat 154.718 kb on + strandat 154.718 kb on + strandat 154.718 kb on + strandat 154.718 kb on + strandat 154.718 kb on + strandat 154.719 kb on - strandat 154.719 kb on - strandat 154.757 kb on + strandat 154.757 kb on + strandat 154.757 kb on + strandat 154.757 kb on + strandat 154.841 kb on + strandat 154.842 kb on - strandat 155.027 kb on + strand, within GFF3954at 155.027 kb on + strand, within GFF3954at 155.027 kb on + strand, within GFF3954at 155.027 kb on + strand, within GFF3954at 155.027 kb on + strand, within GFF3954at 155.027 kb on + strand, within GFF3954at 155.027 kb on + strand, within GFF3954at 155.027 kb on + strand, within GFF3954at 155.027 kb on + strand, within GFF3954at 155.027 kb on + strand, within GFF3954at 155.028 kb on - strand, within GFF3954at 155.028 kb on - strand, within GFF3954at 155.028 kb on - strand, within GFF3954at 155.028 kb on - strand, within GFF3954at 155.028 kb on - strand, within GFF3954at 155.028 kb on - strand, within GFF3954at 155.028 kb on - strand, within GFF3954at 155.028 kb on - strand, within GFF3954at 155.028 kb on - strand, within GFF3954at 155.028 kb on - strand, within GFF3954at 155.028 kb on - strand, within GFF3954at 155.028 kb on - strand, within GFF3954at 155.285 kb on + strand, within GFF3954at 155.286 kb on - strand, within GFF3954at 155.286 kb on - strand, within GFF3954at 155.286 kb on - strand, within GFF3954at 155.286 kb on - strand, within GFF3954at 155.850 kb on + strandat 155.850 kb on + strandat 155.851 kb on - strandat 155.851 kb on - strandat 155.851 kb on - strandat 155.851 kb on - strandat 155.851 kb on - strandat 155.976 kb on + strand, within GFF3955at 155.976 kb on + strand, within GFF3955at 155.976 kb on + strand, within GFF3955at 156.138 kb on + strand, within GFF3955at 156.138 kb on + strand, within GFF3955at 156.138 kb on + strand, within GFF3955at 156.138 kb on + strand, within GFF3955at 156.139 kb on - strand, within GFF3955at 156.139 kb on - strand, within GFF3955at 156.139 kb on - strand, within GFF3955at 156.139 kb on - strand, within GFF3955at 156.139 kb on - strand, within GFF3955at 156.147 kb on + strand, within GFF3955at 156.147 kb on + strand, within GFF3955at 156.147 kb on + strand, within GFF3955at 156.147 kb on + strand, within GFF3955at 156.147 kb on + strand, within GFF3955at 156.148 kb on - strand, within GFF3955at 156.148 kb on - strand, within GFF3955at 156.148 kb on - strand, within GFF3955at 156.148 kb on - strand, within GFF3955at 156.148 kb on - strand, within GFF3955at 156.157 kb on - strand, within GFF3955at 156.168 kb on + strand, within GFF3955at 156.168 kb on + strand, within GFF3955at 156.168 kb on + strand, within GFF3955at 156.168 kb on + strand, within GFF3955at 156.169 kb on - strand, within GFF3955at 156.169 kb on - strand, within GFF3955at 156.169 kb on - strand, within GFF3955at 156.369 kb on + strand, within GFF3955at 156.369 kb on + strand, within GFF3955at 156.369 kb on + strand, within GFF3955at 156.370 kb on - strand, within GFF3955at 156.370 kb on - strand, within GFF3955at 156.370 kb on - strand, within GFF3955at 156.370 kb on - strand, within GFF3955at 156.370 kb on - strand, within GFF3955at 156.370 kb on - strand, within GFF3955at 156.414 kb on + strand, within GFF3955at 156.550 kb on + strand, within GFF3955

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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153,780 + GFF3952 0.87 -0.9
153,780 + GFF3952 0.87 +1.0
153,780 + GFF3952 0.87 +1.5
153,826 + -0.5
153,826 + -0.2
153,827 - -1.6
153,827 - +0.3
153,829 + +0.7
153,829 + -0.4
153,829 + -0.1
153,829 + +0.1
153,829 + +0.7
153,829 + +0.2
153,829 + -0.9
153,829 + +0.7
153,830 - -0.2
153,830 - +0.3
153,830 - -0.2
153,843 - -0.5
153,928 + +0.5
153,929 - +0.3
153,935 + -1.1
153,935 + +1.1
153,935 + -0.6
153,935 + -0.9
153,936 - -0.0
153,936 - -0.1
153,936 - -1.9
153,936 - +0.4
153,936 - +1.9
153,936 - -0.7
153,936 - -0.3
153,945 - -0.9
153,945 - -0.9
154,284 + GFF3953 0.40 -0.3
154,284 + GFF3953 0.40 +1.4
154,284 + GFF3953 0.40 -1.2
154,284 + GFF3953 0.40 +0.8
154,284 + GFF3953 0.40 +0.4
154,285 - GFF3953 0.40 +0.2
154,285 - GFF3953 0.40 -0.2
154,285 - GFF3953 0.40 -0.8
154,438 + GFF3953 0.61 +1.0
154,438 + GFF3953 0.61 +0.3
154,438 + GFF3953 0.61 -0.0
154,439 - GFF3953 0.61 -0.1
154,439 - GFF3953 0.61 -1.0
154,516 + GFF3953 0.72 -0.2
154,621 + GFF3953 0.87 -0.7
154,621 + GFF3953 0.87 -0.0
154,621 + GFF3953 0.87 -0.5
154,621 + GFF3953 0.87 -1.3
154,622 - GFF3953 0.87 -0.5
154,697 - -0.8
154,697 - -0.8
154,718 + +0.0
154,718 + +1.0
154,718 + +0.7
154,718 + +0.3
154,718 + -0.2
154,719 - -1.5
154,719 - +1.4
154,757 + -0.4
154,757 + -0.3
154,757 + +0.9
154,757 + -0.5
154,841 + +1.3
154,842 - -0.2
155,027 + GFF3954 0.26 -0.2
155,027 + GFF3954 0.26 +0.3
155,027 + GFF3954 0.26 +0.1
155,027 + GFF3954 0.26 +0.8
155,027 + GFF3954 0.26 +0.8
155,027 + GFF3954 0.26 -0.2
155,027 + GFF3954 0.26 +1.5
155,027 + GFF3954 0.26 +2.1
155,027 + GFF3954 0.26 -0.1
155,027 + GFF3954 0.26 +0.8
155,028 - GFF3954 0.26 +1.2
155,028 - GFF3954 0.26 +2.7
155,028 - GFF3954 0.26 -0.1
155,028 - GFF3954 0.26 -1.5
155,028 - GFF3954 0.26 +0.3
155,028 - GFF3954 0.26 +0.3
155,028 - GFF3954 0.26 +1.7
155,028 - GFF3954 0.26 +0.3
155,028 - GFF3954 0.26 -0.2
155,028 - GFF3954 0.26 -0.2
155,028 - GFF3954 0.26 +0.8
155,028 - GFF3954 0.26 -1.1
155,285 + GFF3954 0.51 +0.1
155,286 - GFF3954 0.52 +2.0
155,286 - GFF3954 0.52 +1.8
155,286 - GFF3954 0.52 +1.5
155,286 - GFF3954 0.52 +1.0
155,850 + +0.1
155,850 + -0.6
155,851 - -1.0
155,851 - -1.2
155,851 - -0.2
155,851 - -1.7
155,851 - -0.7
155,976 + GFF3955 0.16 -0.5
155,976 + GFF3955 0.16 +0.2
155,976 + GFF3955 0.16 +1.1
156,138 + GFF3955 0.31 +0.3
156,138 + GFF3955 0.31 +0.2
156,138 + GFF3955 0.31 -0.0
156,138 + GFF3955 0.31 -0.1
156,139 - GFF3955 0.31 -1.2
156,139 - GFF3955 0.31 -1.1
156,139 - GFF3955 0.31 +0.1
156,139 - GFF3955 0.31 -0.1
156,139 - GFF3955 0.31 -0.1
156,147 + GFF3955 0.32 +0.5
156,147 + GFF3955 0.32 -0.9
156,147 + GFF3955 0.32 -0.2
156,147 + GFF3955 0.32 -0.3
156,147 + GFF3955 0.32 -0.3
156,148 - GFF3955 0.32 +0.2
156,148 - GFF3955 0.32 -0.7
156,148 - GFF3955 0.32 +0.4
156,148 - GFF3955 0.32 -0.0
156,148 - GFF3955 0.32 +0.4
156,157 - GFF3955 0.33 -0.7
156,168 + GFF3955 0.34 +0.5
156,168 + GFF3955 0.34 +0.1
156,168 + GFF3955 0.34 -0.4
156,168 + GFF3955 0.34 -0.6
156,169 - GFF3955 0.34 -1.6
156,169 - GFF3955 0.34 +1.7
156,169 - GFF3955 0.34 -0.1
156,369 + GFF3955 0.52 +0.5
156,369 + GFF3955 0.52 -1.5
156,369 + GFF3955 0.52 -0.1
156,370 - GFF3955 0.52 -0.3
156,370 - GFF3955 0.52 -1.2
156,370 - GFF3955 0.52 +0.1
156,370 - GFF3955 0.52 -0.6
156,370 - GFF3955 0.52 +0.4
156,370 - GFF3955 0.52 -1.8
156,414 + GFF3955 0.56 +0.4
156,550 + GFF3955 0.69 -0.8

Or see this region's nucleotide sequence