Strain Fitness in Variovorax sp. SCN45 around GFF3691

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3690 and GFF3691 overlap by 41 nucleotidesGFF3691 and GFF3692 are separated by 46 nucleotides GFF3690 - ABC transporter, ATP-binding protein (cluster 2, ribose/xylose/arabinose/galactose) / ABC transporter, ATP-binding protein (cluster 2, ribose/xylose/arabinose/galactose), at 189,143 to 190,690 GFF3690 GFF3691 - ABC transporter, permease protein (cluster 2, ribose/xylose/arabinose/galactose), at 190,650 to 191,684 GFF3691 GFF3692 - ABC transporter, substrate-binding protein (cluster 2, ribose/xylose/arabinose/galactose), at 191,731 to 192,693 GFF3692 Position (kb) 190 191 192Strain fitness (log2 ratio) -2 -1 0 1 2 3at 189.755 kb on + strand, within GFF3690at 189.755 kb on + strand, within GFF3690at 189.755 kb on + strand, within GFF3690at 189.755 kb on + strand, within GFF3690at 189.755 kb on + strand, within GFF3690at 189.755 kb on + strand, within GFF3690at 189.755 kb on + strand, within GFF3690at 189.756 kb on - strand, within GFF3690at 189.756 kb on - strand, within GFF3690at 189.756 kb on - strand, within GFF3690at 189.756 kb on - strand, within GFF3690at 189.756 kb on - strand, within GFF3690at 189.756 kb on - strand, within GFF3690at 190.174 kb on + strand, within GFF3690at 190.174 kb on + strand, within GFF3690at 190.175 kb on - strand, within GFF3690at 190.175 kb on - strand, within GFF3690at 190.175 kb on - strand, within GFF3690at 190.175 kb on - strand, within GFF3690at 190.175 kb on - strand, within GFF3690at 190.178 kb on + strand, within GFF3690at 190.179 kb on - strand, within GFF3690at 190.179 kb on - strand, within GFF3690at 190.179 kb on - strand, within GFF3690at 190.262 kb on + strand, within GFF3690at 190.263 kb on - strand, within GFF3690at 190.326 kb on - strand, within GFF3690at 190.326 kb on - strand, within GFF3690at 190.484 kb on + strand, within GFF3690at 190.484 kb on + strand, within GFF3690at 190.484 kb on + strand, within GFF3690at 190.484 kb on + strand, within GFF3690at 190.484 kb on + strand, within GFF3690at 190.484 kb on + strand, within GFF3690at 190.485 kb on - strand, within GFF3690at 191.146 kb on - strand, within GFF3691at 191.146 kb on - strand, within GFF3691at 191.146 kb on - strand, within GFF3691at 191.196 kb on + strand, within GFF3691at 191.196 kb on + strand, within GFF3691at 191.196 kb on + strand, within GFF3691at 191.197 kb on - strand, within GFF3691at 191.197 kb on - strand, within GFF3691at 191.197 kb on - strand, within GFF3691at 191.197 kb on - strand, within GFF3691at 191.208 kb on + strand, within GFF3691at 191.208 kb on + strand, within GFF3691at 191.209 kb on - strand, within GFF3691at 191.209 kb on - strand, within GFF3691at 191.211 kb on + strand, within GFF3691at 191.211 kb on + strand, within GFF3691at 191.211 kb on + strand, within GFF3691at 191.211 kb on + strand, within GFF3691at 191.212 kb on - strand, within GFF3691at 191.212 kb on - strand, within GFF3691at 191.281 kb on + strand, within GFF3691at 191.281 kb on + strand, within GFF3691at 191.282 kb on - strand, within GFF3691at 191.282 kb on - strand, within GFF3691at 191.299 kb on - strand, within GFF3691at 191.307 kb on + strand, within GFF3691at 191.308 kb on - strand, within GFF3691at 191.347 kb on - strand, within GFF3691at 191.385 kb on + strand, within GFF3691at 191.385 kb on + strand, within GFF3691at 191.385 kb on + strand, within GFF3691at 191.385 kb on + strand, within GFF3691at 191.385 kb on + strand, within GFF3691at 191.385 kb on + strand, within GFF3691at 191.386 kb on - strand, within GFF3691at 191.386 kb on - strand, within GFF3691at 191.427 kb on + strand, within GFF3691at 191.427 kb on + strand, within GFF3691at 191.427 kb on + strand, within GFF3691at 191.427 kb on + strand, within GFF3691at 191.428 kb on - strand, within GFF3691at 191.428 kb on - strand, within GFF3691at 191.428 kb on - strand, within GFF3691at 191.616 kb on + strandat 191.616 kb on + strandat 191.616 kb on + strandat 191.617 kb on - strandat 191.873 kb on - strand, within GFF3692at 191.873 kb on - strand, within GFF3692at 192.077 kb on - strand, within GFF3692at 192.077 kb on - strand, within GFF3692at 192.127 kb on + strand, within GFF3692at 192.127 kb on + strand, within GFF3692at 192.127 kb on + strand, within GFF3692at 192.128 kb on - strand, within GFF3692at 192.128 kb on - strand, within GFF3692at 192.172 kb on + strand, within GFF3692at 192.173 kb on - strand, within GFF3692at 192.173 kb on - strand, within GFF3692at 192.173 kb on - strand, within GFF3692at 192.173 kb on - strand, within GFF3692at 192.310 kb on + strand, within GFF3692at 192.310 kb on + strand, within GFF3692at 192.311 kb on - strand, within GFF3692at 192.311 kb on - strand, within GFF3692at 192.311 kb on - strand, within GFF3692at 192.356 kb on - strand, within GFF3692at 192.544 kb on + strand, within GFF3692at 192.544 kb on + strand, within GFF3692at 192.545 kb on - strand, within GFF3692at 192.563 kb on - strand, within GFF3692at 192.563 kb on - strand, within GFF3692at 192.670 kb on + strandat 192.671 kb on - strandat 192.671 kb on - strandat 192.671 kb on - strandat 192.671 kb on - strandat 192.671 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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189,755 + GFF3690 0.40 +0.5
189,755 + GFF3690 0.40 +0.8
189,755 + GFF3690 0.40 -0.4
189,755 + GFF3690 0.40 -0.3
189,755 + GFF3690 0.40 +0.2
189,755 + GFF3690 0.40 +1.0
189,755 + GFF3690 0.40 +0.0
189,756 - GFF3690 0.40 -0.3
189,756 - GFF3690 0.40 -0.5
189,756 - GFF3690 0.40 -0.0
189,756 - GFF3690 0.40 -0.3
189,756 - GFF3690 0.40 +0.5
189,756 - GFF3690 0.40 +0.4
190,174 + GFF3690 0.67 -1.0
190,174 + GFF3690 0.67 +0.1
190,175 - GFF3690 0.67 +0.1
190,175 - GFF3690 0.67 +0.4
190,175 - GFF3690 0.67 -0.1
190,175 - GFF3690 0.67 -0.2
190,175 - GFF3690 0.67 -1.3
190,178 + GFF3690 0.67 -0.2
190,179 - GFF3690 0.67 +0.4
190,179 - GFF3690 0.67 +0.8
190,179 - GFF3690 0.67 +1.6
190,262 + GFF3690 0.72 +0.1
190,263 - GFF3690 0.72 +0.6
190,326 - GFF3690 0.76 +0.5
190,326 - GFF3690 0.76 +0.2
190,484 + GFF3690 0.87 -2.4
190,484 + GFF3690 0.87 -0.8
190,484 + GFF3690 0.87 -0.8
190,484 + GFF3690 0.87 -0.4
190,484 + GFF3690 0.87 +0.2
190,484 + GFF3690 0.87 -1.0
190,485 - GFF3690 0.87 -0.5
191,146 - GFF3691 0.48 -0.5
191,146 - GFF3691 0.48 -0.1
191,146 - GFF3691 0.48 +0.3
191,196 + GFF3691 0.53 -0.3
191,196 + GFF3691 0.53 -0.3
191,196 + GFF3691 0.53 -0.2
191,197 - GFF3691 0.53 -0.5
191,197 - GFF3691 0.53 -1.2
191,197 - GFF3691 0.53 +0.4
191,197 - GFF3691 0.53 -0.4
191,208 + GFF3691 0.54 -0.2
191,208 + GFF3691 0.54 +0.2
191,209 - GFF3691 0.54 +1.0
191,209 - GFF3691 0.54 -0.2
191,211 + GFF3691 0.54 +1.2
191,211 + GFF3691 0.54 -0.6
191,211 + GFF3691 0.54 -0.1
191,211 + GFF3691 0.54 -0.5
191,212 - GFF3691 0.54 +0.1
191,212 - GFF3691 0.54 +0.4
191,281 + GFF3691 0.61 -0.2
191,281 + GFF3691 0.61 +0.5
191,282 - GFF3691 0.61 -0.0
191,282 - GFF3691 0.61 -0.4
191,299 - GFF3691 0.63 -1.1
191,307 + GFF3691 0.63 -0.4
191,308 - GFF3691 0.64 +0.5
191,347 - GFF3691 0.67 +0.2
191,385 + GFF3691 0.71 -2.2
191,385 + GFF3691 0.71 +0.1
191,385 + GFF3691 0.71 +1.2
191,385 + GFF3691 0.71 -0.2
191,385 + GFF3691 0.71 -0.8
191,385 + GFF3691 0.71 +0.4
191,386 - GFF3691 0.71 -0.4
191,386 - GFF3691 0.71 +3.4
191,427 + GFF3691 0.75 -0.1
191,427 + GFF3691 0.75 +0.6
191,427 + GFF3691 0.75 -1.4
191,427 + GFF3691 0.75 -0.5
191,428 - GFF3691 0.75 -1.1
191,428 - GFF3691 0.75 -0.6
191,428 - GFF3691 0.75 +1.1
191,616 + -1.9
191,616 + +0.8
191,616 + -0.2
191,617 - -0.5
191,873 - GFF3692 0.15 -0.2
191,873 - GFF3692 0.15 -0.2
192,077 - GFF3692 0.36 +0.4
192,077 - GFF3692 0.36 +1.1
192,127 + GFF3692 0.41 -0.4
192,127 + GFF3692 0.41 +0.5
192,127 + GFF3692 0.41 +0.7
192,128 - GFF3692 0.41 -0.2
192,128 - GFF3692 0.41 -0.3
192,172 + GFF3692 0.46 +1.2
192,173 - GFF3692 0.46 -0.9
192,173 - GFF3692 0.46 -0.5
192,173 - GFF3692 0.46 +0.2
192,173 - GFF3692 0.46 -1.9
192,310 + GFF3692 0.60 -0.1
192,310 + GFF3692 0.60 -0.4
192,311 - GFF3692 0.60 -0.0
192,311 - GFF3692 0.60 +0.0
192,311 - GFF3692 0.60 +0.4
192,356 - GFF3692 0.65 +0.4
192,544 + GFF3692 0.84 +0.5
192,544 + GFF3692 0.84 +0.1
192,545 - GFF3692 0.85 -0.4
192,563 - GFF3692 0.86 -0.1
192,563 - GFF3692 0.86 +1.6
192,670 + +1.2
192,671 - +0.3
192,671 - -0.3
192,671 - -1.0
192,671 - +0.5
192,671 - -0.4

Or see this region's nucleotide sequence