Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3667 and GFF3668 are separated by 19 nucleotides GFF3668 and GFF3669 are separated by 149 nucleotides
GFF3667 - Uncharacterized MFS-type transporter, at 168,101 to 169,369
GFF3667
GFF3668 - hypothetical protein, at 169,389 to 170,174
GFF3668
GFF3669 - Two-component system response regulator protein, at 170,324 to 171,694
GFF3669
Position (kb) 169
170
171 Strain fitness (log2 ratio) -1
0
1 at 168.459 kb on + strand, within GFF3667 at 168.459 kb on + strand, within GFF3667 at 168.459 kb on + strand, within GFF3667 at 168.459 kb on + strand, within GFF3667 at 168.459 kb on + strand, within GFF3667 at 168.459 kb on + strand, within GFF3667 at 168.460 kb on - strand, within GFF3667 at 168.460 kb on - strand, within GFF3667 at 168.460 kb on - strand, within GFF3667 at 168.460 kb on - strand, within GFF3667 at 168.460 kb on - strand, within GFF3667 at 168.460 kb on - strand, within GFF3667 at 168.717 kb on + strand, within GFF3667 at 168.718 kb on - strand, within GFF3667 at 168.718 kb on - strand, within GFF3667 at 168.718 kb on - strand, within GFF3667 at 168.718 kb on - strand, within GFF3667 at 168.718 kb on - strand, within GFF3667 at 168.858 kb on + strand, within GFF3667 at 169.071 kb on + strand, within GFF3667 at 169.071 kb on + strand, within GFF3667 at 169.072 kb on - strand, within GFF3667 at 169.633 kb on + strand, within GFF3668 at 169.633 kb on + strand, within GFF3668 at 169.633 kb on + strand, within GFF3668 at 169.633 kb on + strand, within GFF3668 at 169.634 kb on - strand, within GFF3668 at 169.634 kb on - strand, within GFF3668 at 169.634 kb on - strand, within GFF3668 at 169.634 kb on - strand, within GFF3668 at 169.634 kb on - strand, within GFF3668 at 169.634 kb on - strand, within GFF3668 at 169.634 kb on - strand, within GFF3668 at 169.714 kb on + strand, within GFF3668 at 169.714 kb on + strand, within GFF3668 at 169.714 kb on + strand, within GFF3668 at 169.714 kb on + strand, within GFF3668 at 169.714 kb on + strand, within GFF3668 at 169.714 kb on + strand, within GFF3668 at 169.714 kb on + strand, within GFF3668 at 169.714 kb on + strand, within GFF3668 at 169.715 kb on - strand, within GFF3668 at 169.715 kb on - strand, within GFF3668 at 169.715 kb on - strand, within GFF3668 at 169.715 kb on - strand, within GFF3668 at 169.715 kb on - strand, within GFF3668 at 169.715 kb on - strand, within GFF3668 at 169.715 kb on - strand, within GFF3668 at 169.715 kb on - strand, within GFF3668 at 169.715 kb on - strand, within GFF3668 at 170.337 kb on + strand at 170.338 kb on - strand at 170.338 kb on - strand at 170.355 kb on + strand at 170.356 kb on - strand at 170.799 kb on + strand, within GFF3669 at 171.171 kb on + strand, within GFF3669
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 168,459 + GFF3667 0.28 -0.1 168,459 + GFF3667 0.28 -1.2 168,459 + GFF3667 0.28 -0.4 168,459 + GFF3667 0.28 -0.3 168,459 + GFF3667 0.28 +0.0 168,459 + GFF3667 0.28 -0.8 168,460 - GFF3667 0.28 +1.2 168,460 - GFF3667 0.28 -0.6 168,460 - GFF3667 0.28 -0.9 168,460 - GFF3667 0.28 +0.2 168,460 - GFF3667 0.28 -0.6 168,460 - GFF3667 0.28 -0.8 168,717 + GFF3667 0.49 +0.4 168,718 - GFF3667 0.49 +0.0 168,718 - GFF3667 0.49 -1.1 168,718 - GFF3667 0.49 -0.2 168,718 - GFF3667 0.49 -0.3 168,718 - GFF3667 0.49 -0.4 168,858 + GFF3667 0.60 -0.5 169,071 + GFF3667 0.76 -0.5 169,071 + GFF3667 0.76 +0.5 169,072 - GFF3667 0.77 -0.1 169,633 + GFF3668 0.31 -0.3 169,633 + GFF3668 0.31 +0.2 169,633 + GFF3668 0.31 +1.6 169,633 + GFF3668 0.31 +1.1 169,634 - GFF3668 0.31 -0.7 169,634 - GFF3668 0.31 +0.0 169,634 - GFF3668 0.31 +0.3 169,634 - GFF3668 0.31 -0.5 169,634 - GFF3668 0.31 +0.2 169,634 - GFF3668 0.31 +1.0 169,634 - GFF3668 0.31 -0.2 169,714 + GFF3668 0.41 -0.2 169,714 + GFF3668 0.41 -0.7 169,714 + GFF3668 0.41 -0.5 169,714 + GFF3668 0.41 +0.0 169,714 + GFF3668 0.41 +0.2 169,714 + GFF3668 0.41 +0.0 169,714 + GFF3668 0.41 +0.2 169,714 + GFF3668 0.41 +1.7 169,715 - GFF3668 0.41 -0.8 169,715 - GFF3668 0.41 -0.2 169,715 - GFF3668 0.41 +0.3 169,715 - GFF3668 0.41 -0.8 169,715 - GFF3668 0.41 +0.4 169,715 - GFF3668 0.41 +0.2 169,715 - GFF3668 0.41 -0.2 169,715 - GFF3668 0.41 +0.2 169,715 - GFF3668 0.41 +1.3 170,337 + +0.0 170,338 - +0.8 170,338 - -0.6 170,355 + +0.7 170,356 - +0.4 170,799 + GFF3669 0.35 -0.2 171,171 + GFF3669 0.62 -0.8
Or see this region's nucleotide sequence