Strain Fitness in Variovorax sp. SCN45 around GFF362

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF361 and GFF362 are separated by 11 nucleotidesGFF362 and GFF363 are separated by 61 nucleotidesGFF363 and GFF364 are separated by 18 nucleotides GFF361 - 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / Enoyl CoA hydratase (EC 4.2.1.17), at 391,460 to 392,980 GFF361 GFF362 - Enoyl-CoA hydratase (EC 4.2.1.17), at 392,992 to 393,771 GFF362 GFF363 - Transcriptional regulator, Crp/Fnr family, at 393,833 to 394,552 GFF363 GFF364 - acyl-CoA dehydrogenase, putative phosphotransferase, at 394,571 to 395,680 GFF364 Position (kb) 392 393 394Strain fitness (log2 ratio) -2 -1 0 1 2at 391.993 kb on + strand, within GFF361at 391.993 kb on + strand, within GFF361at 392.052 kb on - strand, within GFF361at 392.207 kb on + strand, within GFF361at 392.207 kb on + strand, within GFF361at 392.207 kb on + strand, within GFF361at 392.207 kb on + strand, within GFF361at 392.207 kb on + strand, within GFF361at 392.207 kb on + strand, within GFF361at 392.207 kb on + strand, within GFF361at 392.208 kb on - strand, within GFF361at 392.208 kb on - strand, within GFF361at 392.208 kb on - strand, within GFF361at 392.208 kb on - strand, within GFF361at 392.208 kb on - strand, within GFF361at 392.208 kb on - strand, within GFF361at 392.208 kb on - strand, within GFF361at 392.208 kb on - strand, within GFF361at 392.208 kb on - strand, within GFF361at 392.208 kb on - strand, within GFF361at 392.208 kb on - strand, within GFF361at 392.216 kb on + strand, within GFF361at 392.216 kb on + strand, within GFF361at 392.216 kb on + strand, within GFF361at 392.217 kb on - strand, within GFF361at 392.217 kb on - strand, within GFF361at 392.306 kb on + strand, within GFF361at 392.306 kb on + strand, within GFF361at 392.306 kb on + strand, within GFF361at 392.307 kb on - strand, within GFF361at 392.307 kb on - strand, within GFF361at 392.312 kb on + strand, within GFF361at 392.313 kb on - strand, within GFF361at 392.816 kb on + strand, within GFF361at 392.897 kb on + strandat 392.897 kb on + strandat 392.897 kb on + strandat 392.897 kb on + strandat 392.897 kb on + strandat 392.898 kb on - strandat 392.898 kb on - strandat 392.898 kb on - strandat 392.898 kb on - strandat 392.912 kb on + strandat 392.979 kb on - strandat 393.085 kb on + strand, within GFF362at 393.085 kb on + strand, within GFF362at 393.085 kb on + strand, within GFF362at 393.085 kb on + strand, within GFF362at 393.086 kb on - strand, within GFF362at 393.086 kb on - strand, within GFF362at 393.086 kb on - strand, within GFF362at 393.086 kb on - strand, within GFF362at 393.086 kb on - strand, within GFF362at 393.086 kb on - strand, within GFF362at 393.086 kb on - strand, within GFF362at 393.394 kb on + strand, within GFF362at 393.394 kb on + strand, within GFF362at 393.394 kb on + strand, within GFF362at 393.394 kb on + strand, within GFF362at 393.394 kb on + strand, within GFF362at 393.394 kb on + strand, within GFF362at 393.394 kb on + strand, within GFF362at 393.395 kb on - strand, within GFF362at 393.763 kb on + strandat 393.764 kb on - strandat 393.764 kb on - strandat 393.764 kb on - strandat 393.764 kb on - strandat 393.850 kb on + strandat 393.850 kb on + strandat 393.850 kb on + strandat 393.850 kb on + strandat 393.850 kb on + strandat 393.851 kb on - strandat 393.851 kb on - strandat 393.851 kb on - strandat 393.851 kb on - strandat 393.851 kb on - strandat 393.851 kb on - strandat 393.851 kb on - strandat 393.900 kb on + strandat 393.900 kb on + strandat 393.900 kb on + strandat 393.900 kb on + strandat 393.900 kb on + strandat 393.900 kb on + strandat 393.901 kb on - strandat 393.901 kb on - strandat 393.901 kb on - strandat 393.901 kb on - strandat 393.901 kb on - strandat 393.913 kb on - strand, within GFF363at 393.950 kb on + strand, within GFF363at 393.950 kb on + strand, within GFF363at 393.950 kb on + strand, within GFF363at 393.951 kb on - strand, within GFF363at 393.951 kb on - strand, within GFF363at 394.070 kb on + strand, within GFF363at 394.070 kb on + strand, within GFF363at 394.070 kb on + strand, within GFF363at 394.070 kb on + strand, within GFF363at 394.071 kb on - strand, within GFF363at 394.071 kb on - strand, within GFF363at 394.071 kb on - strand, within GFF363at 394.071 kb on - strand, within GFF363at 394.071 kb on - strand, within GFF363at 394.071 kb on - strand, within GFF363at 394.071 kb on - strand, within GFF363at 394.071 kb on - strand, within GFF363at 394.139 kb on + strand, within GFF363at 394.139 kb on + strand, within GFF363at 394.139 kb on + strand, within GFF363at 394.140 kb on - strand, within GFF363at 394.140 kb on - strand, within GFF363at 394.140 kb on - strand, within GFF363at 394.140 kb on - strand, within GFF363at 394.140 kb on - strand, within GFF363at 394.140 kb on - strand, within GFF363at 394.140 kb on - strand, within GFF363at 394.140 kb on - strand, within GFF363at 394.140 kb on - strand, within GFF363at 394.217 kb on + strand, within GFF363at 394.217 kb on + strand, within GFF363at 394.217 kb on + strand, within GFF363at 394.217 kb on + strand, within GFF363at 394.217 kb on + strand, within GFF363at 394.217 kb on + strand, within GFF363at 394.218 kb on - strand, within GFF363at 394.218 kb on - strand, within GFF363at 394.218 kb on - strand, within GFF363at 394.285 kb on + strand, within GFF363at 394.285 kb on + strand, within GFF363at 394.286 kb on - strand, within GFF363at 394.340 kb on + strand, within GFF363at 394.341 kb on - strand, within GFF363at 394.341 kb on - strand, within GFF363at 394.341 kb on - strand, within GFF363at 394.341 kb on - strand, within GFF363at 394.551 kb on - strandat 394.551 kb on - strandat 394.551 kb on - strandat 394.733 kb on + strand, within GFF364at 394.733 kb on + strand, within GFF364at 394.734 kb on - strand, within GFF364at 394.734 kb on - strand, within GFF364at 394.734 kb on - strand, within GFF364at 394.734 kb on - strand, within GFF364at 394.760 kb on + strand, within GFF364at 394.760 kb on + strand, within GFF364at 394.760 kb on + strand, within GFF364at 394.760 kb on + strand, within GFF364at 394.760 kb on + strand, within GFF364at 394.760 kb on + strand, within GFF364at 394.760 kb on + strand, within GFF364at 394.760 kb on + strand, within GFF364at 394.761 kb on - strand, within GFF364at 394.761 kb on - strand, within GFF364at 394.761 kb on - strand, within GFF364at 394.761 kb on - strand, within GFF364

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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391,993 + GFF361 0.35 -1.0
391,993 + GFF361 0.35 +0.6
392,052 - GFF361 0.39 -0.7
392,207 + GFF361 0.49 -0.2
392,207 + GFF361 0.49 +0.6
392,207 + GFF361 0.49 -0.2
392,207 + GFF361 0.49 +1.7
392,207 + GFF361 0.49 +1.2
392,207 + GFF361 0.49 +0.2
392,207 + GFF361 0.49 +1.1
392,208 - GFF361 0.49 +0.2
392,208 - GFF361 0.49 -0.2
392,208 - GFF361 0.49 +0.5
392,208 - GFF361 0.49 +0.6
392,208 - GFF361 0.49 -0.1
392,208 - GFF361 0.49 -0.6
392,208 - GFF361 0.49 +0.5
392,208 - GFF361 0.49 -0.2
392,208 - GFF361 0.49 -1.4
392,208 - GFF361 0.49 -1.2
392,208 - GFF361 0.49 -0.9
392,216 + GFF361 0.50 -0.3
392,216 + GFF361 0.50 -0.0
392,216 + GFF361 0.50 +1.1
392,217 - GFF361 0.50 -1.0
392,217 - GFF361 0.50 +0.1
392,306 + GFF361 0.56 +0.3
392,306 + GFF361 0.56 -0.2
392,306 + GFF361 0.56 -2.4
392,307 - GFF361 0.56 -0.9
392,307 - GFF361 0.56 -0.1
392,312 + GFF361 0.56 +1.9
392,313 - GFF361 0.56 -0.8
392,816 + GFF361 0.89 -0.7
392,897 + +0.7
392,897 + +1.6
392,897 + -0.5
392,897 + +0.8
392,897 + +0.6
392,898 - -0.2
392,898 - -0.4
392,898 - +0.2
392,898 - -0.1
392,912 + -1.0
392,979 - +0.0
393,085 + GFF362 0.12 +0.3
393,085 + GFF362 0.12 -0.3
393,085 + GFF362 0.12 -1.3
393,085 + GFF362 0.12 +1.0
393,086 - GFF362 0.12 +1.0
393,086 - GFF362 0.12 +0.3
393,086 - GFF362 0.12 -1.0
393,086 - GFF362 0.12 +0.4
393,086 - GFF362 0.12 -0.2
393,086 - GFF362 0.12 +0.7
393,086 - GFF362 0.12 -0.0
393,394 + GFF362 0.52 -0.0
393,394 + GFF362 0.52 +0.1
393,394 + GFF362 0.52 +0.7
393,394 + GFF362 0.52 +2.3
393,394 + GFF362 0.52 +0.4
393,394 + GFF362 0.52 -1.0
393,394 + GFF362 0.52 -0.3
393,395 - GFF362 0.52 +0.1
393,763 + -1.3
393,764 - -0.6
393,764 - -0.4
393,764 - -0.2
393,764 - -0.6
393,850 + -1.2
393,850 + +0.4
393,850 + -0.1
393,850 + +0.9
393,850 + -0.2
393,851 - +0.1
393,851 - +0.4
393,851 - -0.6
393,851 - +0.0
393,851 - -0.1
393,851 - +1.6
393,851 - +1.1
393,900 + +0.3
393,900 + -0.8
393,900 + -1.0
393,900 + +0.2
393,900 + -1.9
393,900 + -1.4
393,901 - -0.7
393,901 - -0.9
393,901 - +0.1
393,901 - -0.9
393,901 - -0.6
393,913 - GFF363 0.11 -1.0
393,950 + GFF363 0.16 -0.1
393,950 + GFF363 0.16 -0.5
393,950 + GFF363 0.16 +0.7
393,951 - GFF363 0.16 -1.1
393,951 - GFF363 0.16 +0.6
394,070 + GFF363 0.33 +0.3
394,070 + GFF363 0.33 +0.4
394,070 + GFF363 0.33 +0.2
394,070 + GFF363 0.33 +0.6
394,071 - GFF363 0.33 +0.3
394,071 - GFF363 0.33 +1.1
394,071 - GFF363 0.33 -0.4
394,071 - GFF363 0.33 +0.1
394,071 - GFF363 0.33 -0.3
394,071 - GFF363 0.33 +0.2
394,071 - GFF363 0.33 +0.2
394,071 - GFF363 0.33 -0.9
394,139 + GFF363 0.42 -0.6
394,139 + GFF363 0.42 -0.6
394,139 + GFF363 0.42 -0.2
394,140 - GFF363 0.43 -0.4
394,140 - GFF363 0.43 -0.7
394,140 - GFF363 0.43 -0.3
394,140 - GFF363 0.43 -1.4
394,140 - GFF363 0.43 -0.4
394,140 - GFF363 0.43 -0.0
394,140 - GFF363 0.43 -0.1
394,140 - GFF363 0.43 -0.0
394,140 - GFF363 0.43 +0.2
394,217 + GFF363 0.53 +0.2
394,217 + GFF363 0.53 +0.3
394,217 + GFF363 0.53 -0.6
394,217 + GFF363 0.53 +0.3
394,217 + GFF363 0.53 -1.1
394,217 + GFF363 0.53 -0.0
394,218 - GFF363 0.53 +0.5
394,218 - GFF363 0.53 +0.7
394,218 - GFF363 0.53 -0.1
394,285 + GFF363 0.63 -0.5
394,285 + GFF363 0.63 +0.4
394,286 - GFF363 0.63 +0.2
394,340 + GFF363 0.70 +0.7
394,341 - GFF363 0.71 +0.7
394,341 - GFF363 0.71 +1.0
394,341 - GFF363 0.71 -0.2
394,341 - GFF363 0.71 +0.3
394,551 - +0.6
394,551 - -0.4
394,551 - +0.4
394,733 + GFF364 0.15 -0.4
394,733 + GFF364 0.15 -0.9
394,734 - GFF364 0.15 -0.0
394,734 - GFF364 0.15 -0.9
394,734 - GFF364 0.15 +0.1
394,734 - GFF364 0.15 -0.1
394,760 + GFF364 0.17 -0.2
394,760 + GFF364 0.17 -0.1
394,760 + GFF364 0.17 -0.4
394,760 + GFF364 0.17 +0.6
394,760 + GFF364 0.17 -0.5
394,760 + GFF364 0.17 +1.2
394,760 + GFF364 0.17 -1.4
394,760 + GFF364 0.17 +1.6
394,761 - GFF364 0.17 +0.8
394,761 - GFF364 0.17 +0.6
394,761 - GFF364 0.17 +0.2
394,761 - GFF364 0.17 +0.1

Or see this region's nucleotide sequence