Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3482 and GFF3483 overlap by 4 nucleotides GFF3483 and GFF3484 are separated by 67 nucleotides GFF3484 and GFF3485 are separated by 95 nucleotides GFF3485 and GFF3486 are separated by 19 nucleotides
GFF3482 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 304,590 to 305,552
GFF3482
GFF3483 - ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 305,549 to 306,409
GFF3483
GFF3484 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 306,477 to 307,670
GFF3484
GFF3485 - Ferredoxin, 2Fe-2S, at 307,766 to 308,089
GFF3485
GFF3486 - glutamine synthetase family protein, at 308,109 to 309,557
GFF3486
Position (kb) 306
307
308 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 305.616 kb on + strand at 305.616 kb on + strand at 305.616 kb on + strand at 305.616 kb on + strand at 305.616 kb on + strand at 305.617 kb on - strand at 305.617 kb on - strand at 305.617 kb on - strand at 305.617 kb on - strand at 305.617 kb on - strand at 305.617 kb on - strand at 305.617 kb on - strand at 305.617 kb on - strand at 305.617 kb on - strand at 305.646 kb on + strand, within GFF3483 at 305.646 kb on + strand, within GFF3483 at 305.646 kb on + strand, within GFF3483 at 305.646 kb on + strand, within GFF3483 at 305.646 kb on + strand, within GFF3483 at 305.647 kb on - strand, within GFF3483 at 305.649 kb on + strand, within GFF3483 at 305.649 kb on + strand, within GFF3483 at 305.649 kb on + strand, within GFF3483 at 305.649 kb on + strand, within GFF3483 at 305.650 kb on - strand, within GFF3483 at 305.650 kb on - strand, within GFF3483 at 305.650 kb on - strand, within GFF3483 at 305.650 kb on - strand, within GFF3483 at 305.650 kb on - strand, within GFF3483 at 305.650 kb on - strand, within GFF3483 at 305.650 kb on - strand, within GFF3483 at 305.745 kb on + strand, within GFF3483 at 305.754 kb on + strand, within GFF3483 at 305.754 kb on + strand, within GFF3483 at 305.754 kb on + strand, within GFF3483 at 305.755 kb on - strand, within GFF3483 at 305.755 kb on - strand, within GFF3483 at 305.755 kb on - strand, within GFF3483 at 306.020 kb on + strand, within GFF3483 at 306.084 kb on + strand, within GFF3483 at 306.084 kb on + strand, within GFF3483 at 306.085 kb on - strand, within GFF3483 at 306.156 kb on + strand, within GFF3483 at 306.157 kb on - strand, within GFF3483 at 306.169 kb on - strand, within GFF3483 at 306.277 kb on - strand, within GFF3483 at 306.277 kb on - strand, within GFF3483 at 306.378 kb on + strand at 306.379 kb on - strand at 306.379 kb on - strand at 306.478 kb on + strand at 306.478 kb on + strand at 306.478 kb on + strand at 306.478 kb on + strand at 306.478 kb on + strand at 306.478 kb on + strand at 306.478 kb on + strand at 306.478 kb on + strand at 306.478 kb on + strand at 306.479 kb on - strand at 306.479 kb on - strand at 306.479 kb on - strand at 306.479 kb on - strand at 306.479 kb on - strand at 306.479 kb on - strand at 306.479 kb on - strand at 306.479 kb on - strand at 306.571 kb on + strand at 306.571 kb on + strand at 306.571 kb on + strand at 306.571 kb on + strand at 306.572 kb on - strand at 306.572 kb on - strand at 306.572 kb on - strand at 306.572 kb on - strand at 306.572 kb on - strand at 306.727 kb on + strand, within GFF3484 at 306.746 kb on - strand, within GFF3484 at 306.746 kb on - strand, within GFF3484 at 306.829 kb on + strand, within GFF3484 at 306.829 kb on + strand, within GFF3484 at 306.829 kb on + strand, within GFF3484 at 306.829 kb on + strand, within GFF3484 at 306.829 kb on + strand, within GFF3484 at 306.830 kb on - strand, within GFF3484 at 306.830 kb on - strand, within GFF3484 at 306.830 kb on - strand, within GFF3484 at 306.880 kb on + strand, within GFF3484 at 306.880 kb on + strand, within GFF3484 at 306.880 kb on + strand, within GFF3484 at 306.881 kb on - strand, within GFF3484 at 306.881 kb on - strand, within GFF3484 at 306.881 kb on - strand, within GFF3484 at 306.881 kb on - strand, within GFF3484 at 306.881 kb on - strand, within GFF3484 at 306.881 kb on - strand, within GFF3484 at 307.036 kb on + strand, within GFF3484 at 307.037 kb on - strand, within GFF3484 at 307.037 kb on - strand, within GFF3484 at 307.037 kb on - strand, within GFF3484 at 307.037 kb on - strand, within GFF3484 at 307.165 kb on + strand, within GFF3484 at 307.165 kb on + strand, within GFF3484 at 307.165 kb on + strand, within GFF3484 at 307.165 kb on + strand, within GFF3484 at 307.166 kb on - strand, within GFF3484 at 307.195 kb on + strand, within GFF3484 at 307.195 kb on + strand, within GFF3484 at 307.195 kb on + strand, within GFF3484 at 307.195 kb on + strand, within GFF3484 at 307.195 kb on + strand, within GFF3484 at 307.196 kb on - strand, within GFF3484 at 307.196 kb on - strand, within GFF3484 at 307.196 kb on - strand, within GFF3484 at 307.196 kb on - strand, within GFF3484 at 307.196 kb on - strand, within GFF3484 at 307.196 kb on - strand, within GFF3484 at 307.196 kb on - strand, within GFF3484 at 307.249 kb on + strand, within GFF3484 at 307.249 kb on + strand, within GFF3484 at 307.336 kb on + strand, within GFF3484 at 307.337 kb on - strand, within GFF3484 at 307.498 kb on + strand, within GFF3484 at 307.498 kb on - strand, within GFF3484 at 307.532 kb on - strand, within GFF3484 at 307.552 kb on + strand at 307.552 kb on + strand at 307.552 kb on + strand at 307.552 kb on + strand at 307.552 kb on + strand at 307.552 kb on + strand at 307.552 kb on + strand at 307.553 kb on - strand at 307.935 kb on + strand, within GFF3485 at 307.936 kb on - strand, within GFF3485 at 307.936 kb on - strand, within GFF3485 at 307.936 kb on - strand, within GFF3485 at 308.073 kb on + strand at 308.073 kb on + strand at 308.073 kb on + strand at 308.073 kb on + strand at 308.073 kb on + strand at 308.073 kb on + strand at 308.073 kb on + strand at 308.073 kb on + strand at 308.073 kb on + strand at 308.073 kb on + strand at 308.073 kb on + strand at 308.073 kb on + strand at 308.073 kb on + strand at 308.074 kb on - strand at 308.074 kb on - strand at 308.074 kb on - strand at 308.074 kb on - strand at 308.074 kb on - strand at 308.074 kb on - strand at 308.074 kb on - strand at 308.074 kb on - strand at 308.074 kb on - strand at 308.074 kb on - strand at 308.074 kb on - strand at 308.074 kb on - strand at 308.074 kb on - strand at 308.074 kb on - strand at 308.074 kb on - strand at 308.075 kb on - strand at 308.197 kb on + strand at 308.197 kb on + strand at 308.197 kb on + strand at 308.198 kb on - strand at 308.380 kb on + strand, within GFF3486 at 308.380 kb on + strand, within GFF3486 at 308.380 kb on + strand, within GFF3486 at 308.381 kb on - strand, within GFF3486 at 308.381 kb on - strand, within GFF3486 at 308.381 kb on - strand, within GFF3486 at 308.381 kb on - strand, within GFF3486 at 308.381 kb on - strand, within GFF3486 at 308.381 kb on - strand, within GFF3486 at 308.387 kb on - strand, within GFF3486 at 308.387 kb on - strand, within GFF3486 at 308.533 kb on + strand, within GFF3486 at 308.533 kb on + strand, within GFF3486 at 308.534 kb on - strand, within GFF3486 at 308.534 kb on - strand, within GFF3486 at 308.534 kb on - strand, within GFF3486 at 308.534 kb on - strand, within GFF3486 at 308.599 kb on + strand, within GFF3486 at 308.599 kb on + strand, within GFF3486 at 308.599 kb on + strand, within GFF3486 at 308.599 kb on + strand, within GFF3486 at 308.599 kb on + strand, within GFF3486 at 308.599 kb on + strand, within GFF3486 at 308.599 kb on + strand, within GFF3486 at 308.599 kb on + strand, within GFF3486 at 308.599 kb on + strand, within GFF3486 at 308.599 kb on + strand, within GFF3486 at 308.599 kb on + strand, within GFF3486 at 308.600 kb on - strand, within GFF3486 at 308.600 kb on - strand, within GFF3486
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 305,616 + +0.1 305,616 + -0.6 305,616 + -0.8 305,616 + +0.7 305,616 + -1.5 305,617 - +0.3 305,617 - +0.1 305,617 - +0.9 305,617 - -0.2 305,617 - -0.7 305,617 - -1.6 305,617 - -0.5 305,617 - -0.8 305,617 - +0.5 305,646 + GFF3483 0.11 +0.1 305,646 + GFF3483 0.11 +0.8 305,646 + GFF3483 0.11 -0.4 305,646 + GFF3483 0.11 -0.2 305,646 + GFF3483 0.11 +0.5 305,647 - GFF3483 0.11 -0.2 305,649 + GFF3483 0.12 -0.1 305,649 + GFF3483 0.12 -0.6 305,649 + GFF3483 0.12 -0.1 305,649 + GFF3483 0.12 -1.0 305,650 - GFF3483 0.12 -0.0 305,650 - GFF3483 0.12 -0.6 305,650 - GFF3483 0.12 -0.1 305,650 - GFF3483 0.12 +0.9 305,650 - GFF3483 0.12 -0.5 305,650 - GFF3483 0.12 -2.1 305,650 - GFF3483 0.12 -0.4 305,745 + GFF3483 0.23 -1.3 305,754 + GFF3483 0.24 -0.7 305,754 + GFF3483 0.24 -0.3 305,754 + GFF3483 0.24 -0.5 305,755 - GFF3483 0.24 +1.1 305,755 - GFF3483 0.24 -0.2 305,755 - GFF3483 0.24 +0.1 306,020 + GFF3483 0.55 -0.4 306,084 + GFF3483 0.62 -0.6 306,084 + GFF3483 0.62 -0.2 306,085 - GFF3483 0.62 -0.8 306,156 + GFF3483 0.70 -0.1 306,157 - GFF3483 0.71 -0.9 306,169 - GFF3483 0.72 +0.5 306,277 - GFF3483 0.85 -0.2 306,277 - GFF3483 0.85 +0.4 306,378 + -1.3 306,379 - -1.0 306,379 - -1.0 306,478 + -0.8 306,478 + -0.5 306,478 + +0.8 306,478 + +0.9 306,478 + -0.4 306,478 + -0.3 306,478 + +0.3 306,478 + -0.9 306,478 + -0.1 306,479 - +0.7 306,479 - +0.2 306,479 - +1.4 306,479 - +0.4 306,479 - -0.1 306,479 - -0.9 306,479 - -0.3 306,479 - +0.1 306,571 + -0.3 306,571 + +0.2 306,571 + -1.2 306,571 + -1.1 306,572 - -0.4 306,572 - -0.5 306,572 - -0.9 306,572 - -0.5 306,572 - +0.9 306,727 + GFF3484 0.21 +0.0 306,746 - GFF3484 0.23 -0.5 306,746 - GFF3484 0.23 +0.3 306,829 + GFF3484 0.29 -1.3 306,829 + GFF3484 0.29 -1.1 306,829 + GFF3484 0.29 +0.5 306,829 + GFF3484 0.29 +0.4 306,829 + GFF3484 0.29 -0.4 306,830 - GFF3484 0.30 -0.5 306,830 - GFF3484 0.30 -0.9 306,830 - GFF3484 0.30 +0.3 306,880 + GFF3484 0.34 -0.0 306,880 + GFF3484 0.34 -1.1 306,880 + GFF3484 0.34 -2.0 306,881 - GFF3484 0.34 -0.6 306,881 - GFF3484 0.34 -0.5 306,881 - GFF3484 0.34 +0.0 306,881 - GFF3484 0.34 -0.3 306,881 - GFF3484 0.34 -0.5 306,881 - GFF3484 0.34 -1.3 307,036 + GFF3484 0.47 -0.2 307,037 - GFF3484 0.47 -0.8 307,037 - GFF3484 0.47 +0.1 307,037 - GFF3484 0.47 -1.3 307,037 - GFF3484 0.47 +0.9 307,165 + GFF3484 0.58 -1.1 307,165 + GFF3484 0.58 -0.5 307,165 + GFF3484 0.58 +0.9 307,165 + GFF3484 0.58 +1.0 307,166 - GFF3484 0.58 +0.1 307,195 + GFF3484 0.60 -1.1 307,195 + GFF3484 0.60 -0.3 307,195 + GFF3484 0.60 +0.1 307,195 + GFF3484 0.60 -1.5 307,195 + GFF3484 0.60 +0.5 307,196 - GFF3484 0.60 -0.2 307,196 - GFF3484 0.60 -0.7 307,196 - GFF3484 0.60 -0.6 307,196 - GFF3484 0.60 +0.3 307,196 - GFF3484 0.60 -0.4 307,196 - GFF3484 0.60 -0.6 307,196 - GFF3484 0.60 +0.4 307,249 + GFF3484 0.65 +0.7 307,249 + GFF3484 0.65 +0.1 307,336 + GFF3484 0.72 +1.3 307,337 - GFF3484 0.72 -0.8 307,498 + GFF3484 0.86 +0.8 307,498 - GFF3484 0.86 -1.1 307,532 - GFF3484 0.88 -0.0 307,552 + +0.6 307,552 + +1.6 307,552 + +0.5 307,552 + -0.5 307,552 + +0.9 307,552 + -0.3 307,552 + -1.0 307,553 - -0.5 307,935 + GFF3485 0.52 +0.4 307,936 - GFF3485 0.52 -0.4 307,936 - GFF3485 0.52 -1.1 307,936 - GFF3485 0.52 +0.1 308,073 + +0.7 308,073 + -0.3 308,073 + -1.8 308,073 + +1.5 308,073 + -0.3 308,073 + +1.9 308,073 + +0.5 308,073 + -0.8 308,073 + -0.3 308,073 + -1.3 308,073 + -0.5 308,073 + +0.1 308,073 + -0.1 308,074 - -0.1 308,074 - +1.9 308,074 - -0.3 308,074 - -0.0 308,074 - +0.2 308,074 - -0.1 308,074 - +1.9 308,074 - +0.5 308,074 - -1.7 308,074 - -0.5 308,074 - +0.0 308,074 - -0.4 308,074 - -0.1 308,074 - -0.4 308,074 - -0.3 308,075 - +0.2 308,197 + +0.2 308,197 + -1.3 308,197 + +0.9 308,198 - +0.2 308,380 + GFF3486 0.19 -0.5 308,380 + GFF3486 0.19 -0.5 308,380 + GFF3486 0.19 +0.5 308,381 - GFF3486 0.19 +0.9 308,381 - GFF3486 0.19 -0.7 308,381 - GFF3486 0.19 -0.3 308,381 - GFF3486 0.19 -0.6 308,381 - GFF3486 0.19 +0.1 308,381 - GFF3486 0.19 +0.0 308,387 - GFF3486 0.19 +0.6 308,387 - GFF3486 0.19 -0.7 308,533 + GFF3486 0.29 -0.5 308,533 + GFF3486 0.29 -0.6 308,534 - GFF3486 0.29 -0.3 308,534 - GFF3486 0.29 +0.7 308,534 - GFF3486 0.29 +0.5 308,534 - GFF3486 0.29 +2.9 308,599 + GFF3486 0.34 -0.7 308,599 + GFF3486 0.34 +0.3 308,599 + GFF3486 0.34 -0.8 308,599 + GFF3486 0.34 +0.4 308,599 + GFF3486 0.34 -0.2 308,599 + GFF3486 0.34 -0.1 308,599 + GFF3486 0.34 -0.6 308,599 + GFF3486 0.34 -1.0 308,599 + GFF3486 0.34 +0.3 308,599 + GFF3486 0.34 -0.5 308,599 + GFF3486 0.34 -0.2 308,600 - GFF3486 0.34 -0.4 308,600 - GFF3486 0.34 +0.6
Or see this region's nucleotide sequence