Strain Fitness in Variovorax sp. SCN45 around GFF3441

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3439 and GFF3440 are separated by 60 nucleotidesGFF3440 and GFF3441 are separated by 5 nucleotidesGFF3441 and GFF3442 are separated by 86 nucleotidesGFF3442 and GFF3443 are separated by 6 nucleotides GFF3439 - L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17), at 262,230 to 263,612 GFF3439 GFF3440 - FIG00460300: hypothetical protein, at 263,673 to 264,503 GFF3440 GFF3441 - Hypothetical protein VC0266 (sugar utilization related?), at 264,509 to 265,087 GFF3441 GFF3442 - RidA/YER057c/UK114 superfamily protein, at 265,174 to 265,578 GFF3442 GFF3443 - hypothetical protein, at 265,585 to 267,348 GFF3443 Position (kb) 264 265 266Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 263.562 kb on + strandat 263.562 kb on + strandat 263.562 kb on + strandat 263.562 kb on + strandat 263.562 kb on + strandat 263.562 kb on + strandat 263.563 kb on - strandat 263.563 kb on - strandat 263.563 kb on - strandat 263.647 kb on + strandat 263.648 kb on - strandat 263.648 kb on - strandat 263.838 kb on + strand, within GFF3440at 263.839 kb on - strand, within GFF3440at 263.865 kb on + strand, within GFF3440at 263.865 kb on + strand, within GFF3440at 263.865 kb on + strand, within GFF3440at 263.866 kb on - strand, within GFF3440at 263.866 kb on - strand, within GFF3440at 263.866 kb on - strand, within GFF3440at 263.866 kb on - strand, within GFF3440at 263.866 kb on - strand, within GFF3440at 263.866 kb on - strand, within GFF3440at 264.192 kb on + strand, within GFF3440at 264.192 kb on + strand, within GFF3440at 264.193 kb on - strand, within GFF3440at 264.219 kb on + strand, within GFF3440at 264.219 kb on + strand, within GFF3440at 264.220 kb on - strand, within GFF3440at 264.722 kb on + strand, within GFF3441at 264.723 kb on - strand, within GFF3441at 264.723 kb on - strand, within GFF3441at 264.723 kb on - strand, within GFF3441at 264.723 kb on - strand, within GFF3441at 264.723 kb on - strand, within GFF3441at 264.758 kb on + strand, within GFF3441at 264.759 kb on - strand, within GFF3441at 264.759 kb on - strand, within GFF3441at 264.873 kb on + strand, within GFF3441at 264.873 kb on + strand, within GFF3441at 264.874 kb on - strand, within GFF3441at 264.874 kb on - strand, within GFF3441at 264.882 kb on - strand, within GFF3441at 264.954 kb on - strand, within GFF3441at 265.097 kb on + strandat 265.098 kb on - strandat 265.098 kb on - strandat 265.098 kb on - strandat 265.270 kb on + strand, within GFF3442at 265.270 kb on + strand, within GFF3442at 265.270 kb on + strand, within GFF3442at 265.270 kb on + strand, within GFF3442at 265.270 kb on + strand, within GFF3442at 265.270 kb on + strand, within GFF3442at 265.270 kb on + strand, within GFF3442at 265.270 kb on + strand, within GFF3442at 265.270 kb on + strand, within GFF3442at 265.270 kb on + strand, within GFF3442at 265.271 kb on - strand, within GFF3442at 265.271 kb on - strand, within GFF3442at 265.271 kb on - strand, within GFF3442at 265.271 kb on - strand, within GFF3442at 265.271 kb on - strand, within GFF3442at 265.271 kb on - strand, within GFF3442at 265.271 kb on - strand, within GFF3442at 265.271 kb on - strand, within GFF3442at 265.271 kb on - strand, within GFF3442at 265.423 kb on + strand, within GFF3442at 265.423 kb on + strand, within GFF3442at 265.424 kb on - strand, within GFF3442at 265.424 kb on - strand, within GFF3442at 265.424 kb on - strand, within GFF3442at 265.424 kb on - strand, within GFF3442at 265.424 kb on - strand, within GFF3442at 265.465 kb on + strand, within GFF3442at 265.465 kb on + strand, within GFF3442at 265.465 kb on + strand, within GFF3442at 265.465 kb on + strand, within GFF3442at 265.465 kb on + strand, within GFF3442at 265.465 kb on + strand, within GFF3442at 265.465 kb on + strand, within GFF3442at 265.465 kb on + strand, within GFF3442at 265.465 kb on + strand, within GFF3442at 265.465 kb on + strand, within GFF3442at 265.466 kb on - strand, within GFF3442at 265.466 kb on - strand, within GFF3442at 265.466 kb on - strand, within GFF3442at 265.466 kb on - strand, within GFF3442at 265.466 kb on - strand, within GFF3442at 265.637 kb on + strandat 265.637 kb on + strandat 265.638 kb on - strandat 265.638 kb on - strandat 265.638 kb on - strandat 265.638 kb on - strandat 265.638 kb on - strandat 265.806 kb on - strand, within GFF3443at 265.913 kb on + strand, within GFF3443at 265.913 kb on + strand, within GFF3443at 265.914 kb on - strand, within GFF3443at 265.914 kb on - strand, within GFF3443at 265.914 kb on - strand, within GFF3443at 265.914 kb on - strand, within GFF3443at 265.914 kb on - strand, within GFF3443at 265.914 kb on - strand, within GFF3443at 265.914 kb on - strand, within GFF3443at 266.039 kb on + strand, within GFF3443at 266.039 kb on + strand, within GFF3443at 266.039 kb on + strand, within GFF3443at 266.040 kb on - strand, within GFF3443at 266.040 kb on - strand, within GFF3443at 266.040 kb on - strand, within GFF3443

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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263,562 + -0.7
263,562 + +0.1
263,562 + -0.1
263,562 + -0.1
263,562 + +0.6
263,562 + +0.8
263,563 - -0.9
263,563 - -0.1
263,563 - +0.0
263,647 + -0.5
263,648 - -1.2
263,648 - +0.3
263,838 + GFF3440 0.20 +0.6
263,839 - GFF3440 0.20 -1.6
263,865 + GFF3440 0.23 +0.5
263,865 + GFF3440 0.23 -1.1
263,865 + GFF3440 0.23 -1.3
263,866 - GFF3440 0.23 -0.9
263,866 - GFF3440 0.23 +1.0
263,866 - GFF3440 0.23 -0.4
263,866 - GFF3440 0.23 -0.0
263,866 - GFF3440 0.23 -0.7
263,866 - GFF3440 0.23 -0.3
264,192 + GFF3440 0.62 -0.8
264,192 + GFF3440 0.62 +0.3
264,193 - GFF3440 0.63 +0.3
264,219 + GFF3440 0.66 -0.2
264,219 + GFF3440 0.66 +0.2
264,220 - GFF3440 0.66 -0.3
264,722 + GFF3441 0.37 -0.8
264,723 - GFF3441 0.37 +2.3
264,723 - GFF3441 0.37 +0.7
264,723 - GFF3441 0.37 +1.2
264,723 - GFF3441 0.37 +0.6
264,723 - GFF3441 0.37 +0.4
264,758 + GFF3441 0.43 +0.3
264,759 - GFF3441 0.43 -1.5
264,759 - GFF3441 0.43 -0.2
264,873 + GFF3441 0.63 +0.6
264,873 + GFF3441 0.63 -0.1
264,874 - GFF3441 0.63 -0.1
264,874 - GFF3441 0.63 -0.9
264,882 - GFF3441 0.64 -2.7
264,954 - GFF3441 0.77 +0.5
265,097 + +1.9
265,098 - -0.3
265,098 - -0.5
265,098 - +0.4
265,270 + GFF3442 0.24 -0.7
265,270 + GFF3442 0.24 -2.4
265,270 + GFF3442 0.24 +0.1
265,270 + GFF3442 0.24 +0.1
265,270 + GFF3442 0.24 -0.2
265,270 + GFF3442 0.24 -0.5
265,270 + GFF3442 0.24 +0.1
265,270 + GFF3442 0.24 -0.2
265,270 + GFF3442 0.24 -0.4
265,270 + GFF3442 0.24 +0.4
265,271 - GFF3442 0.24 -0.9
265,271 - GFF3442 0.24 -2.9
265,271 - GFF3442 0.24 -0.9
265,271 - GFF3442 0.24 -0.7
265,271 - GFF3442 0.24 +0.6
265,271 - GFF3442 0.24 -1.2
265,271 - GFF3442 0.24 -0.5
265,271 - GFF3442 0.24 +0.2
265,271 - GFF3442 0.24 +0.6
265,423 + GFF3442 0.61 -0.6
265,423 + GFF3442 0.61 +0.1
265,424 - GFF3442 0.62 -0.6
265,424 - GFF3442 0.62 -0.2
265,424 - GFF3442 0.62 -2.1
265,424 - GFF3442 0.62 +0.7
265,424 - GFF3442 0.62 -1.1
265,465 + GFF3442 0.72 +1.1
265,465 + GFF3442 0.72 +0.5
265,465 + GFF3442 0.72 +0.2
265,465 + GFF3442 0.72 -0.8
265,465 + GFF3442 0.72 -0.3
265,465 + GFF3442 0.72 -0.2
265,465 + GFF3442 0.72 -0.3
265,465 + GFF3442 0.72 +0.9
265,465 + GFF3442 0.72 -0.5
265,465 + GFF3442 0.72 -0.1
265,466 - GFF3442 0.72 +0.9
265,466 - GFF3442 0.72 +0.5
265,466 - GFF3442 0.72 -0.1
265,466 - GFF3442 0.72 -0.4
265,466 - GFF3442 0.72 -0.2
265,637 + -1.6
265,637 + +0.1
265,638 - -1.1
265,638 - -0.0
265,638 - -0.3
265,638 - -1.1
265,638 - +0.1
265,806 - GFF3443 0.13 -0.5
265,913 + GFF3443 0.19 +0.4
265,913 + GFF3443 0.19 -0.0
265,914 - GFF3443 0.19 +1.9
265,914 - GFF3443 0.19 -0.9
265,914 - GFF3443 0.19 -0.0
265,914 - GFF3443 0.19 -0.1
265,914 - GFF3443 0.19 -0.6
265,914 - GFF3443 0.19 -0.4
265,914 - GFF3443 0.19 -0.0
266,039 + GFF3443 0.26 +1.1
266,039 + GFF3443 0.26 -0.6
266,039 + GFF3443 0.26 +0.6
266,040 - GFF3443 0.26 -0.2
266,040 - GFF3443 0.26 -0.3
266,040 - GFF3443 0.26 +0.4

Or see this region's nucleotide sequence