Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3377 and GFF3378 are separated by 79 nucleotides GFF3378 and GFF3379 are separated by 6 nucleotides GFF3379 and GFF3380 are separated by 126 nucleotides
GFF3377 - Enoyl-CoA hydratase (EC 4.2.1.17) @ Enoyl-CoA hydratase EchA5 (EC 4.2.1.17), at 197,402 to 198,184
GFF3377
GFF3378 - hypothetical protein, at 198,264 to 199,076
GFF3378
GFF3379 - Aromatic--CoA ligase, at 199,083 to 200,894
GFF3379
GFF3380 - 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), at 201,021 to 201,968
GFF3380
Position (kb) 199
200
201 Strain fitness (log2 ratio) -2
-1
0
1
2 at 198.172 kb on - strand at 198.172 kb on - strand at 198.172 kb on - strand at 198.238 kb on - strand at 198.256 kb on - strand at 198.274 kb on + strand at 198.274 kb on + strand at 198.274 kb on + strand at 198.274 kb on + strand at 198.275 kb on - strand at 198.275 kb on - strand at 198.275 kb on - strand at 198.275 kb on - strand at 198.278 kb on + strand at 198.278 kb on + strand at 198.278 kb on + strand at 198.279 kb on - strand at 198.468 kb on + strand, within GFF3378 at 198.468 kb on + strand, within GFF3378 at 198.468 kb on + strand, within GFF3378 at 198.468 kb on + strand, within GFF3378 at 198.468 kb on + strand, within GFF3378 at 198.468 kb on + strand, within GFF3378 at 198.468 kb on + strand, within GFF3378 at 198.468 kb on + strand, within GFF3378 at 198.469 kb on - strand, within GFF3378 at 198.469 kb on - strand, within GFF3378 at 198.469 kb on - strand, within GFF3378 at 198.469 kb on - strand, within GFF3378 at 198.469 kb on - strand, within GFF3378 at 198.469 kb on - strand, within GFF3378 at 198.469 kb on - strand, within GFF3378 at 198.469 kb on - strand, within GFF3378 at 198.469 kb on - strand, within GFF3378 at 199.183 kb on + strand at 199.183 kb on + strand at 199.183 kb on + strand at 199.184 kb on - strand at 199.184 kb on - strand at 199.184 kb on - strand at 199.184 kb on - strand at 199.184 kb on - strand at 199.567 kb on + strand, within GFF3379 at 199.570 kb on + strand, within GFF3379 at 199.571 kb on - strand, within GFF3379 at 199.874 kb on - strand, within GFF3379 at 199.933 kb on + strand, within GFF3379 at 200.050 kb on + strand, within GFF3379 at 200.050 kb on + strand, within GFF3379 at 200.051 kb on - strand, within GFF3379 at 200.255 kb on - strand, within GFF3379 at 200.420 kb on - strand, within GFF3379 at 200.440 kb on + strand, within GFF3379 at 200.440 kb on + strand, within GFF3379 at 200.440 kb on + strand, within GFF3379 at 200.441 kb on - strand, within GFF3379 at 200.677 kb on + strand, within GFF3379 at 200.677 kb on + strand, within GFF3379 at 200.785 kb on + strand at 200.785 kb on + strand at 200.785 kb on + strand at 200.786 kb on - strand at 200.844 kb on + strand at 200.942 kb on - strand at 201.023 kb on - strand at 201.023 kb on - strand at 201.023 kb on - strand at 201.023 kb on - strand at 201.063 kb on + strand at 201.454 kb on + strand, within GFF3380 at 201.454 kb on + strand, within GFF3380 at 201.686 kb on + strand, within GFF3380
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 198,172 - +2.3 198,172 - +0.9 198,172 - -0.5 198,238 - -0.3 198,256 - -0.2 198,274 + +0.6 198,274 + -0.6 198,274 + -1.6 198,274 + +0.5 198,275 - -0.5 198,275 - -0.3 198,275 - +0.2 198,275 - -0.5 198,278 + -0.4 198,278 + -0.7 198,278 + +0.2 198,279 - -0.1 198,468 + GFF3378 0.25 -1.0 198,468 + GFF3378 0.25 -1.3 198,468 + GFF3378 0.25 +1.3 198,468 + GFF3378 0.25 +0.5 198,468 + GFF3378 0.25 -0.4 198,468 + GFF3378 0.25 -2.1 198,468 + GFF3378 0.25 +0.1 198,468 + GFF3378 0.25 -1.1 198,469 - GFF3378 0.25 -0.5 198,469 - GFF3378 0.25 +0.2 198,469 - GFF3378 0.25 -0.7 198,469 - GFF3378 0.25 -0.5 198,469 - GFF3378 0.25 +0.2 198,469 - GFF3378 0.25 -0.4 198,469 - GFF3378 0.25 +1.3 198,469 - GFF3378 0.25 -0.5 198,469 - GFF3378 0.25 -1.0 199,183 + +0.4 199,183 + -0.5 199,183 + -0.2 199,184 - +0.5 199,184 - +0.3 199,184 - -0.5 199,184 - -0.5 199,184 - -1.0 199,567 + GFF3379 0.27 -1.2 199,570 + GFF3379 0.27 +0.1 199,571 - GFF3379 0.27 +1.5 199,874 - GFF3379 0.44 -0.7 199,933 + GFF3379 0.47 -0.7 200,050 + GFF3379 0.53 -0.2 200,050 + GFF3379 0.53 -0.5 200,051 - GFF3379 0.53 +0.9 200,255 - GFF3379 0.65 -0.4 200,420 - GFF3379 0.74 +1.1 200,440 + GFF3379 0.75 -1.6 200,440 + GFF3379 0.75 -0.9 200,440 + GFF3379 0.75 -1.3 200,441 - GFF3379 0.75 +0.9 200,677 + GFF3379 0.88 -0.7 200,677 + GFF3379 0.88 -0.2 200,785 + -0.9 200,785 + -2.1 200,785 + +0.5 200,786 - -0.1 200,844 + -0.5 200,942 - -1.6 201,023 - -0.2 201,023 - +0.6 201,023 - +0.3 201,023 - +0.5 201,063 + +0.1 201,454 + GFF3380 0.46 +0.2 201,454 + GFF3380 0.46 -0.2 201,686 + GFF3380 0.70 -0.8
Or see this region's nucleotide sequence