Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3371 and GFF3372 overlap by 4 nucleotides GFF3372 and GFF3373 are separated by 66 nucleotides GFF3373 and GFF3374 are separated by 21 nucleotides GFF3374 and GFF3375 overlap by 4 nucleotides
GFF3371 - FIG00456413: hypothetical protein, at 191,037 to 192,425
GFF3371
GFF3372 - hypothetical protein, at 192,422 to 192,874
GFF3372
GFF3373 - Hydroxymethylglutaryl-CoA reductase (EC 1.1.1.34), at 192,941 to 194,230
GFF3373
GFF3374 - no description, at 194,252 to 194,371
GFF3374
GFF3375 - DNA-binding transcriptional regulator, MocR family / aminotransferase domain, at 194,368 to 195,756
GFF3375
Position (kb) 192
193
194
195 Strain fitness (log2 ratio) -2
-1
0
1
2 at 192.462 kb on + strand at 192.480 kb on + strand, within GFF3372 at 192.480 kb on + strand, within GFF3372 at 192.480 kb on + strand, within GFF3372 at 192.480 kb on + strand, within GFF3372 at 192.481 kb on - strand, within GFF3372 at 192.481 kb on - strand, within GFF3372 at 192.481 kb on - strand, within GFF3372 at 192.481 kb on - strand, within GFF3372 at 192.693 kb on + strand, within GFF3372 at 192.693 kb on + strand, within GFF3372 at 192.694 kb on - strand, within GFF3372 at 192.827 kb on + strand, within GFF3372 at 192.827 kb on + strand, within GFF3372 at 192.827 kb on + strand, within GFF3372 at 192.828 kb on - strand, within GFF3372 at 192.942 kb on + strand at 192.942 kb on + strand at 192.943 kb on - strand at 192.943 kb on - strand at 192.943 kb on - strand at 193.329 kb on + strand, within GFF3373 at 193.330 kb on - strand, within GFF3373 at 193.330 kb on - strand, within GFF3373 at 193.350 kb on + strand, within GFF3373 at 193.350 kb on + strand, within GFF3373 at 193.476 kb on + strand, within GFF3373 at 193.476 kb on + strand, within GFF3373 at 193.477 kb on - strand, within GFF3373 at 193.858 kb on - strand, within GFF3373 at 194.007 kb on + strand, within GFF3373 at 194.007 kb on + strand, within GFF3373 at 194.008 kb on - strand, within GFF3373 at 194.274 kb on + strand, within GFF3374 at 194.274 kb on + strand, within GFF3374 at 194.275 kb on - strand, within GFF3374 at 194.275 kb on - strand, within GFF3374 at 194.483 kb on - strand at 194.740 kb on + strand, within GFF3375 at 194.740 kb on + strand, within GFF3375 at 194.741 kb on - strand, within GFF3375 at 194.741 kb on - strand, within GFF3375 at 194.741 kb on - strand, within GFF3375 at 195.175 kb on + strand, within GFF3375 at 195.176 kb on - strand, within GFF3375 at 195.176 kb on - strand, within GFF3375
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 192,462 + -1.9 192,480 + GFF3372 0.13 -0.7 192,480 + GFF3372 0.13 +0.0 192,480 + GFF3372 0.13 +1.3 192,480 + GFF3372 0.13 +0.4 192,481 - GFF3372 0.13 -0.7 192,481 - GFF3372 0.13 +0.1 192,481 - GFF3372 0.13 -1.6 192,481 - GFF3372 0.13 +1.1 192,693 + GFF3372 0.60 -0.3 192,693 + GFF3372 0.60 -0.3 192,694 - GFF3372 0.60 +2.4 192,827 + GFF3372 0.89 +0.5 192,827 + GFF3372 0.89 -0.4 192,827 + GFF3372 0.89 -0.2 192,828 - GFF3372 0.90 -0.6 192,942 + +0.7 192,942 + -0.2 192,943 - +2.2 192,943 - -0.3 192,943 - -0.3 193,329 + GFF3373 0.30 +1.3 193,330 - GFF3373 0.30 +0.3 193,330 - GFF3373 0.30 -0.1 193,350 + GFF3373 0.32 +2.1 193,350 + GFF3373 0.32 -0.3 193,476 + GFF3373 0.41 +1.2 193,476 + GFF3373 0.41 -0.2 193,477 - GFF3373 0.42 -0.2 193,858 - GFF3373 0.71 -0.1 194,007 + GFF3373 0.83 +0.9 194,007 + GFF3373 0.83 -1.1 194,008 - GFF3373 0.83 +0.9 194,274 + GFF3374 0.18 +0.1 194,274 + GFF3374 0.18 +1.3 194,275 - GFF3374 0.19 +0.7 194,275 - GFF3374 0.19 +2.5 194,483 - -0.1 194,740 + GFF3375 0.27 +1.4 194,740 + GFF3375 0.27 -0.0 194,741 - GFF3375 0.27 -0.7 194,741 - GFF3375 0.27 +1.5 194,741 - GFF3375 0.27 +0.0 195,175 + GFF3375 0.58 -0.1 195,176 - GFF3375 0.58 -1.1 195,176 - GFF3375 0.58 -0.3
Or see this region's nucleotide sequence