Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3368 and GFF3369 are separated by 139 nucleotides GFF3369 and GFF3370 are separated by 87 nucleotides GFF3370 and GFF3371 overlap by 17 nucleotides
GFF3368 - Pyrimidine permease, at 187,783 to 189,066
GFF3368
GFF3369 - 1,4-dihydroxy-2-naphthoyl-CoA hydrolase (EC 3.1.2.28) in menaquinone biosynthesis, at 189,206 to 189,628
GFF3369
GFF3370 - hypothetical protein, at 189,716 to 191,053
GFF3370
GFF3371 - FIG00456413: hypothetical protein, at 191,037 to 192,425
GFF3371
Position (kb) 189
190
191
192 Strain fitness (log2 ratio) -2
-1
0
1
2 at 188.828 kb on + strand, within GFF3368 at 188.828 kb on + strand, within GFF3368 at 188.829 kb on - strand, within GFF3368 at 188.829 kb on - strand, within GFF3368 at 188.858 kb on + strand, within GFF3368 at 188.858 kb on + strand, within GFF3368 at 188.859 kb on - strand, within GFF3368 at 189.411 kb on + strand, within GFF3369 at 189.477 kb on + strand, within GFF3369 at 189.622 kb on + strand at 189.623 kb on - strand at 189.623 kb on - strand at 189.623 kb on - strand at 189.623 kb on - strand at 189.646 kb on + strand at 189.647 kb on - strand at 189.653 kb on + strand at 189.654 kb on - strand at 189.654 kb on - strand at 189.654 kb on - strand at 189.654 kb on - strand at 189.654 kb on - strand at 189.654 kb on - strand at 189.657 kb on + strand at 189.657 kb on + strand at 189.658 kb on - strand at 189.658 kb on - strand at 189.658 kb on - strand at 189.658 kb on - strand at 189.658 kb on - strand at 189.664 kb on - strand at 189.664 kb on - strand at 189.787 kb on - strand at 190.215 kb on - strand, within GFF3370 at 190.215 kb on - strand, within GFF3370 at 190.282 kb on + strand, within GFF3370 at 190.283 kb on - strand, within GFF3370 at 190.709 kb on + strand, within GFF3370 at 190.730 kb on + strand, within GFF3370 at 190.730 kb on + strand, within GFF3370 at 190.730 kb on + strand, within GFF3370 at 190.730 kb on + strand, within GFF3370 at 190.731 kb on - strand, within GFF3370 at 190.731 kb on - strand, within GFF3370 at 190.731 kb on - strand, within GFF3370 at 190.763 kb on - strand, within GFF3370 at 190.857 kb on + strand, within GFF3370 at 190.857 kb on + strand, within GFF3370 at 191.038 kb on + strand at 191.038 kb on + strand at 191.039 kb on - strand at 191.083 kb on + strand at 191.083 kb on + strand at 191.084 kb on - strand at 191.084 kb on - strand at 191.084 kb on - strand at 191.084 kb on - strand at 191.086 kb on + strand at 191.086 kb on + strand at 191.086 kb on + strand at 191.086 kb on + strand at 191.087 kb on - strand at 191.512 kb on + strand, within GFF3371 at 191.512 kb on + strand, within GFF3371 at 191.512 kb on + strand, within GFF3371 at 191.512 kb on + strand, within GFF3371 at 191.512 kb on + strand, within GFF3371 at 191.512 kb on + strand, within GFF3371 at 191.512 kb on + strand, within GFF3371 at 191.512 kb on + strand, within GFF3371 at 191.512 kb on + strand, within GFF3371 at 191.512 kb on + strand, within GFF3371 at 191.513 kb on - strand, within GFF3371 at 191.513 kb on - strand, within GFF3371 at 191.513 kb on - strand, within GFF3371 at 191.513 kb on - strand, within GFF3371 at 191.566 kb on + strand, within GFF3371 at 191.567 kb on - strand, within GFF3371 at 191.567 kb on - strand, within GFF3371 at 191.716 kb on + strand, within GFF3371 at 191.851 kb on + strand, within GFF3371 at 191.875 kb on + strand, within GFF3371 at 191.875 kb on + strand, within GFF3371 at 191.876 kb on - strand, within GFF3371 at 191.876 kb on - strand, within GFF3371
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 188,828 + GFF3368 0.81 +0.1 188,828 + GFF3368 0.81 +0.6 188,829 - GFF3368 0.81 +0.7 188,829 - GFF3368 0.81 -0.7 188,858 + GFF3368 0.84 -0.5 188,858 + GFF3368 0.84 -0.3 188,859 - GFF3368 0.84 -0.1 189,411 + GFF3369 0.48 -0.5 189,477 + GFF3369 0.64 +0.2 189,622 + +0.1 189,623 - +0.1 189,623 - -0.1 189,623 - +0.4 189,623 - +0.3 189,646 + -0.1 189,647 - -0.1 189,653 + -0.9 189,654 - -0.4 189,654 - -0.2 189,654 - -0.2 189,654 - +0.2 189,654 - -0.6 189,654 - -0.3 189,657 + -0.5 189,657 + -0.2 189,658 - +0.1 189,658 - +0.1 189,658 - +0.2 189,658 - +0.2 189,658 - +0.1 189,664 - -0.8 189,664 - +1.2 189,787 - -0.0 190,215 - GFF3370 0.37 +2.3 190,215 - GFF3370 0.37 -0.5 190,282 + GFF3370 0.42 -0.2 190,283 - GFF3370 0.42 +0.2 190,709 + GFF3370 0.74 +0.1 190,730 + GFF3370 0.76 +0.7 190,730 + GFF3370 0.76 +0.5 190,730 + GFF3370 0.76 +0.2 190,730 + GFF3370 0.76 -0.1 190,731 - GFF3370 0.76 -0.1 190,731 - GFF3370 0.76 -1.8 190,731 - GFF3370 0.76 +1.6 190,763 - GFF3370 0.78 +0.0 190,857 + GFF3370 0.85 +0.2 190,857 + GFF3370 0.85 +0.1 191,038 + +1.6 191,038 + -0.1 191,039 - +1.5 191,083 + -1.7 191,083 + +0.3 191,084 - -0.6 191,084 - -0.7 191,084 - +0.5 191,084 - +1.5 191,086 + -0.9 191,086 + -0.5 191,086 + -0.7 191,086 + -0.2 191,087 - +0.1 191,512 + GFF3371 0.34 -0.1 191,512 + GFF3371 0.34 +1.9 191,512 + GFF3371 0.34 -1.3 191,512 + GFF3371 0.34 -1.0 191,512 + GFF3371 0.34 -0.1 191,512 + GFF3371 0.34 +0.7 191,512 + GFF3371 0.34 +0.3 191,512 + GFF3371 0.34 -0.6 191,512 + GFF3371 0.34 -0.3 191,512 + GFF3371 0.34 -0.3 191,513 - GFF3371 0.34 -0.2 191,513 - GFF3371 0.34 +0.5 191,513 - GFF3371 0.34 -0.6 191,513 - GFF3371 0.34 +0.3 191,566 + GFF3371 0.38 -0.3 191,567 - GFF3371 0.38 -0.7 191,567 - GFF3371 0.38 -0.0 191,716 + GFF3371 0.49 -0.3 191,851 + GFF3371 0.59 -0.2 191,875 + GFF3371 0.60 -0.5 191,875 + GFF3371 0.60 -0.8 191,876 - GFF3371 0.60 +0.3 191,876 - GFF3371 0.60 +0.1
Or see this region's nucleotide sequence