Strain Fitness in Variovorax sp. SCN45 around GFF334

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF331 and GFF332 are separated by 2 nucleotidesGFF332 and GFF333 are separated by 9 nucleotidesGFF333 and GFF334 overlap by 28 nucleotidesGFF334 and GFF335 are separated by 84 nucleotides GFF331 - Nucleoside ABC transporter, permease protein 2, at 365,735 to 366,658 GFF331 GFF332 - hypothetical protein, at 366,661 to 367,122 GFF332 GFF333 - hypothetical protein, at 367,132 to 367,584 GFF333 GFF334 - Transcriptional regulator, AraC family, at 367,557 to 368,390 GFF334 GFF335 - Cytosine deaminase (EC 3.5.4.1), at 368,475 to 369,755 GFF335 Position (kb) 367 368 369Strain fitness (log2 ratio) -2 -1 0 1 2at 366.566 kb on + strandat 366.567 kb on - strandat 366.567 kb on - strandat 366.671 kb on + strandat 366.672 kb on - strandat 366.758 kb on - strand, within GFF332at 366.758 kb on - strand, within GFF332at 366.835 kb on + strand, within GFF332at 366.835 kb on + strand, within GFF332at 366.835 kb on + strand, within GFF332at 366.835 kb on + strand, within GFF332at 366.835 kb on + strand, within GFF332at 366.836 kb on - strand, within GFF332at 366.877 kb on + strand, within GFF332at 366.877 kb on + strand, within GFF332at 366.877 kb on + strand, within GFF332at 366.877 kb on + strand, within GFF332at 366.878 kb on - strand, within GFF332at 366.878 kb on - strand, within GFF332at 367.093 kb on + strandat 367.121 kb on - strandat 367.421 kb on - strand, within GFF333at 367.548 kb on + strandat 367.548 kb on + strandat 367.548 kb on + strandat 367.548 kb on + strandat 367.548 kb on + strandat 367.548 kb on + strandat 367.548 kb on + strandat 367.548 kb on + strandat 367.548 kb on + strandat 367.548 kb on + strandat 367.548 kb on + strandat 367.549 kb on - strandat 367.549 kb on - strandat 367.549 kb on - strandat 367.549 kb on - strandat 367.549 kb on - strandat 367.549 kb on - strandat 367.549 kb on - strandat 367.549 kb on - strandat 367.549 kb on - strandat 367.549 kb on - strandat 367.549 kb on - strandat 367.552 kb on + strandat 367.552 kb on + strandat 367.552 kb on + strandat 367.552 kb on + strandat 367.553 kb on - strandat 367.553 kb on - strandat 367.553 kb on - strandat 367.553 kb on - strandat 367.553 kb on - strandat 367.553 kb on - strandat 367.553 kb on - strandat 367.553 kb on - strandat 367.582 kb on + strandat 367.582 kb on + strandat 367.645 kb on + strand, within GFF334at 367.646 kb on - strand, within GFF334at 367.646 kb on - strand, within GFF334at 367.843 kb on + strand, within GFF334at 367.843 kb on + strand, within GFF334at 367.844 kb on - strand, within GFF334at 367.844 kb on - strand, within GFF334at 367.844 kb on - strand, within GFF334at 367.844 kb on - strand, within GFF334at 368.251 kb on + strand, within GFF334at 368.252 kb on - strand, within GFF334at 368.670 kb on + strand, within GFF335at 368.671 kb on - strand, within GFF335at 368.781 kb on + strand, within GFF335at 368.782 kb on - strand, within GFF335at 368.782 kb on - strand, within GFF335at 368.782 kb on - strand, within GFF335at 368.898 kb on + strand, within GFF335at 368.898 kb on + strand, within GFF335at 369.228 kb on + strand, within GFF335at 369.228 kb on + strand, within GFF335at 369.228 kb on + strand, within GFF335at 369.228 kb on + strand, within GFF335at 369.228 kb on + strand, within GFF335at 369.228 kb on + strand, within GFF335at 369.228 kb on + strand, within GFF335at 369.228 kb on + strand, within GFF335at 369.228 kb on + strand, within GFF335at 369.229 kb on - strand, within GFF335at 369.229 kb on - strand, within GFF335at 369.229 kb on - strand, within GFF335at 369.229 kb on - strand, within GFF335at 369.229 kb on - strand, within GFF335at 369.229 kb on - strand, within GFF335at 369.229 kb on - strand, within GFF335at 369.229 kb on - strand, within GFF335at 369.229 kb on - strand, within GFF335at 369.229 kb on - strand, within GFF335at 369.229 kb on - strand, within GFF335at 369.229 kb on - strand, within GFF335at 369.229 kb on - strand, within GFF335at 369.229 kb on - strand, within GFF335at 369.231 kb on + strand, within GFF335at 369.231 kb on + strand, within GFF335at 369.231 kb on + strand, within GFF335at 369.231 kb on + strand, within GFF335at 369.231 kb on + strand, within GFF335at 369.231 kb on + strand, within GFF335at 369.231 kb on + strand, within GFF335at 369.232 kb on - strand, within GFF335at 369.232 kb on - strand, within GFF335at 369.232 kb on - strand, within GFF335at 369.232 kb on - strand, within GFF335at 369.232 kb on - strand, within GFF335at 369.232 kb on - strand, within GFF335at 369.232 kb on - strand, within GFF335at 369.327 kb on + strand, within GFF335at 369.327 kb on + strand, within GFF335at 369.328 kb on - strand, within GFF335at 369.328 kb on - strand, within GFF335at 369.328 kb on - strand, within GFF335

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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366,566 + -1.8
366,567 - -0.8
366,567 - +0.6
366,671 + +0.6
366,672 - -0.4
366,758 - GFF332 0.21 +0.2
366,758 - GFF332 0.21 -0.2
366,835 + GFF332 0.38 +0.1
366,835 + GFF332 0.38 +1.3
366,835 + GFF332 0.38 -0.0
366,835 + GFF332 0.38 +0.0
366,835 + GFF332 0.38 +0.1
366,836 - GFF332 0.38 -0.6
366,877 + GFF332 0.47 -0.4
366,877 + GFF332 0.47 -0.4
366,877 + GFF332 0.47 -0.4
366,877 + GFF332 0.47 -0.6
366,878 - GFF332 0.47 +0.3
366,878 - GFF332 0.47 -1.5
367,093 + -0.0
367,121 - +1.1
367,421 - GFF333 0.64 -0.3
367,548 + -0.6
367,548 + -1.6
367,548 + -1.0
367,548 + -0.1
367,548 + -0.3
367,548 + -0.3
367,548 + +0.6
367,548 + -0.9
367,548 + -0.1
367,548 + -0.9
367,548 + +0.2
367,549 - +1.6
367,549 - -0.5
367,549 - -0.8
367,549 - +0.3
367,549 - -0.2
367,549 - +0.6
367,549 - +1.0
367,549 - -0.6
367,549 - -0.2
367,549 - -0.5
367,549 - +2.0
367,552 + -0.4
367,552 + -1.0
367,552 + -0.0
367,552 + -0.6
367,553 - -1.6
367,553 - +0.0
367,553 - -0.2
367,553 - +0.6
367,553 - -0.6
367,553 - -0.4
367,553 - -0.6
367,553 - -0.4
367,582 + -0.3
367,582 + +1.0
367,645 + GFF334 0.11 +0.1
367,646 - GFF334 0.11 -0.7
367,646 - GFF334 0.11 -0.4
367,843 + GFF334 0.34 -0.4
367,843 + GFF334 0.34 -1.2
367,844 - GFF334 0.34 -0.3
367,844 - GFF334 0.34 -0.3
367,844 - GFF334 0.34 -0.7
367,844 - GFF334 0.34 -1.3
368,251 + GFF334 0.83 -0.1
368,252 - GFF334 0.83 -0.4
368,670 + GFF335 0.15 +0.4
368,671 - GFF335 0.15 -0.1
368,781 + GFF335 0.24 -0.1
368,782 - GFF335 0.24 -0.8
368,782 - GFF335 0.24 +0.3
368,782 - GFF335 0.24 -0.4
368,898 + GFF335 0.33 +0.8
368,898 + GFF335 0.33 +0.1
369,228 + GFF335 0.59 +1.0
369,228 + GFF335 0.59 -0.0
369,228 + GFF335 0.59 -0.0
369,228 + GFF335 0.59 -0.3
369,228 + GFF335 0.59 +0.6
369,228 + GFF335 0.59 -0.8
369,228 + GFF335 0.59 -1.3
369,228 + GFF335 0.59 +1.0
369,228 + GFF335 0.59 -0.0
369,229 - GFF335 0.59 +0.0
369,229 - GFF335 0.59 -1.1
369,229 - GFF335 0.59 +0.3
369,229 - GFF335 0.59 -0.5
369,229 - GFF335 0.59 +0.6
369,229 - GFF335 0.59 +0.1
369,229 - GFF335 0.59 +0.7
369,229 - GFF335 0.59 -0.3
369,229 - GFF335 0.59 -1.5
369,229 - GFF335 0.59 -0.0
369,229 - GFF335 0.59 -0.5
369,229 - GFF335 0.59 -0.3
369,229 - GFF335 0.59 -0.4
369,229 - GFF335 0.59 -1.2
369,231 + GFF335 0.59 -0.8
369,231 + GFF335 0.59 -0.0
369,231 + GFF335 0.59 +0.2
369,231 + GFF335 0.59 +0.4
369,231 + GFF335 0.59 -0.3
369,231 + GFF335 0.59 -0.5
369,231 + GFF335 0.59 +2.0
369,232 - GFF335 0.59 -1.1
369,232 - GFF335 0.59 -0.6
369,232 - GFF335 0.59 -1.4
369,232 - GFF335 0.59 -0.3
369,232 - GFF335 0.59 -0.4
369,232 - GFF335 0.59 -0.1
369,232 - GFF335 0.59 -2.0
369,327 + GFF335 0.67 -0.6
369,327 + GFF335 0.67 -0.8
369,328 - GFF335 0.67 -0.0
369,328 - GFF335 0.67 +0.4
369,328 - GFF335 0.67 +0.4

Or see this region's nucleotide sequence