Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3242 and GFF3243 are separated by 152 nucleotides GFF3243 and GFF3244 are separated by 10 nucleotides
GFF3242 - FIG00444883: hypothetical protein, at 55,715 to 57,067
GFF3242
GFF3243 - Flavin containing amine oxidoreductase, at 57,220 to 58,851
GFF3243
GFF3244 - Spermidine synthase N-terminal extension / Spermidine synthase (EC 2.5.1.16), at 58,862 to 60,505
GFF3244
Position (kb) 57
58
59 Strain fitness (log2 ratio) -2
-1
0
1
2 at 56.254 kb on - strand, within GFF3242 at 56.299 kb on - strand, within GFF3242 at 56.448 kb on + strand, within GFF3242 at 56.448 kb on + strand, within GFF3242 at 56.448 kb on + strand, within GFF3242 at 56.449 kb on - strand, within GFF3242 at 56.449 kb on - strand, within GFF3242 at 56.682 kb on + strand, within GFF3242 at 56.682 kb on + strand, within GFF3242 at 56.682 kb on + strand, within GFF3242 at 56.682 kb on + strand, within GFF3242 at 56.683 kb on - strand, within GFF3242 at 56.683 kb on - strand, within GFF3242 at 56.694 kb on + strand, within GFF3242 at 56.694 kb on + strand, within GFF3242 at 56.695 kb on - strand, within GFF3242 at 56.695 kb on - strand, within GFF3242 at 57.089 kb on + strand at 57.285 kb on - strand at 57.533 kb on + strand, within GFF3243 at 57.617 kb on + strand, within GFF3243 at 57.617 kb on + strand, within GFF3243 at 57.618 kb on - strand, within GFF3243 at 57.638 kb on + strand, within GFF3243 at 57.638 kb on + strand, within GFF3243 at 57.639 kb on - strand, within GFF3243 at 58.068 kb on - strand, within GFF3243 at 58.068 kb on - strand, within GFF3243 at 58.068 kb on - strand, within GFF3243 at 58.101 kb on + strand, within GFF3243 at 58.113 kb on - strand, within GFF3243 at 58.131 kb on - strand, within GFF3243 at 58.131 kb on - strand, within GFF3243 at 58.139 kb on + strand, within GFF3243 at 58.139 kb on + strand, within GFF3243 at 58.242 kb on + strand, within GFF3243 at 58.242 kb on + strand, within GFF3243 at 58.242 kb on + strand, within GFF3243 at 58.243 kb on - strand, within GFF3243 at 58.243 kb on - strand, within GFF3243 at 58.282 kb on - strand, within GFF3243 at 58.301 kb on + strand, within GFF3243 at 58.412 kb on + strand, within GFF3243 at 58.413 kb on - strand, within GFF3243 at 58.503 kb on - strand, within GFF3243 at 58.896 kb on + strand at 58.897 kb on - strand at 58.944 kb on - strand at 59.061 kb on + strand, within GFF3244 at 59.061 kb on + strand, within GFF3244 at 59.061 kb on + strand, within GFF3244 at 59.061 kb on + strand, within GFF3244 at 59.062 kb on - strand, within GFF3244 at 59.062 kb on - strand, within GFF3244 at 59.062 kb on - strand, within GFF3244 at 59.062 kb on - strand, within GFF3244 at 59.097 kb on + strand, within GFF3244 at 59.098 kb on - strand, within GFF3244 at 59.194 kb on - strand, within GFF3244 at 59.244 kb on + strand, within GFF3244 at 59.245 kb on - strand, within GFF3244 at 59.245 kb on - strand, within GFF3244 at 59.245 kb on - strand, within GFF3244 at 59.301 kb on + strand, within GFF3244 at 59.301 kb on + strand, within GFF3244 at 59.302 kb on - strand, within GFF3244 at 59.556 kb on + strand, within GFF3244 at 59.556 kb on + strand, within GFF3244 at 59.556 kb on + strand, within GFF3244 at 59.556 kb on + strand, within GFF3244 at 59.557 kb on - strand, within GFF3244 at 59.557 kb on - strand, within GFF3244 at 59.662 kb on - strand, within GFF3244 at 59.752 kb on - strand, within GFF3244 at 59.787 kb on + strand, within GFF3244 at 59.788 kb on - strand, within GFF3244 at 59.788 kb on - strand, within GFF3244
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 56,254 - GFF3242 0.40 -0.4 56,299 - GFF3242 0.43 +1.3 56,448 + GFF3242 0.54 +0.1 56,448 + GFF3242 0.54 +0.1 56,448 + GFF3242 0.54 -0.3 56,449 - GFF3242 0.54 +0.1 56,449 - GFF3242 0.54 +1.5 56,682 + GFF3242 0.71 -0.8 56,682 + GFF3242 0.71 -0.6 56,682 + GFF3242 0.71 +0.7 56,682 + GFF3242 0.71 +0.3 56,683 - GFF3242 0.72 +0.6 56,683 - GFF3242 0.72 -0.4 56,694 + GFF3242 0.72 -0.3 56,694 + GFF3242 0.72 -0.2 56,695 - GFF3242 0.72 -1.4 56,695 - GFF3242 0.72 +0.3 57,089 + -0.8 57,285 - -0.6 57,533 + GFF3243 0.19 -0.8 57,617 + GFF3243 0.24 -2.2 57,617 + GFF3243 0.24 -0.3 57,618 - GFF3243 0.24 -0.2 57,638 + GFF3243 0.26 -0.7 57,638 + GFF3243 0.26 -0.3 57,639 - GFF3243 0.26 -0.5 58,068 - GFF3243 0.52 -0.1 58,068 - GFF3243 0.52 -1.6 58,068 - GFF3243 0.52 -0.4 58,101 + GFF3243 0.54 -1.0 58,113 - GFF3243 0.55 -1.4 58,131 - GFF3243 0.56 -0.5 58,131 - GFF3243 0.56 +1.2 58,139 + GFF3243 0.56 +0.1 58,139 + GFF3243 0.56 -0.3 58,242 + GFF3243 0.63 -0.9 58,242 + GFF3243 0.63 -0.2 58,242 + GFF3243 0.63 +1.9 58,243 - GFF3243 0.63 -0.1 58,243 - GFF3243 0.63 -0.5 58,282 - GFF3243 0.65 +1.2 58,301 + GFF3243 0.66 +1.1 58,412 + GFF3243 0.73 -0.4 58,413 - GFF3243 0.73 -0.3 58,503 - GFF3243 0.79 -1.2 58,896 + +0.9 58,897 - -0.5 58,944 - -0.1 59,061 + GFF3244 0.12 +1.0 59,061 + GFF3244 0.12 -0.3 59,061 + GFF3244 0.12 +0.0 59,061 + GFF3244 0.12 -0.5 59,062 - GFF3244 0.12 +0.7 59,062 - GFF3244 0.12 +0.1 59,062 - GFF3244 0.12 -0.2 59,062 - GFF3244 0.12 -0.8 59,097 + GFF3244 0.14 +0.4 59,098 - GFF3244 0.14 +0.7 59,194 - GFF3244 0.20 -0.4 59,244 + GFF3244 0.23 -0.0 59,245 - GFF3244 0.23 +1.9 59,245 - GFF3244 0.23 -0.7 59,245 - GFF3244 0.23 -0.8 59,301 + GFF3244 0.27 -0.4 59,301 + GFF3244 0.27 -0.3 59,302 - GFF3244 0.27 -1.7 59,556 + GFF3244 0.42 -0.2 59,556 + GFF3244 0.42 +1.7 59,556 + GFF3244 0.42 -0.6 59,556 + GFF3244 0.42 -0.2 59,557 - GFF3244 0.42 -1.1 59,557 - GFF3244 0.42 +0.1 59,662 - GFF3244 0.49 -0.1 59,752 - GFF3244 0.54 -0.4 59,787 + GFF3244 0.56 -0.7 59,788 - GFF3244 0.56 -0.2 59,788 - GFF3244 0.56 -0.2
Or see this region's nucleotide sequence