Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3169 and GFF3170 overlap by 4 nucleotides GFF3170 and GFF3171 are separated by 10 nucleotides GFF3171 and GFF3172 are separated by 202 nucleotides GFF3172 and GFF3173 are separated by 32 nucleotides
GFF3169 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 609,234 to 610,754
GFF3169
GFF3170 - hypothetical protein, at 610,751 to 611,548
GFF3170
GFF3171 - Uncharacterized protein conserved in bacteria, at 611,559 to 612,785
GFF3171
GFF3172 - Glycosidases, at 612,988 to 613,320
GFF3172
GFF3173 - Transcriptional regulator, IclR family, at 613,353 to 614,159
GFF3173
Position (kb) 611
612
613 Strain fitness (log2 ratio) -2
-1
0
1
2 at 610.561 kb on - strand, within GFF3169 at 610.656 kb on + strand at 610.802 kb on + strand at 610.803 kb on - strand at 610.803 kb on - strand at 610.804 kb on + strand at 610.805 kb on - strand at 611.561 kb on - strand at 611.603 kb on - strand at 611.811 kb on + strand, within GFF3171 at 611.812 kb on - strand, within GFF3171 at 611.860 kb on + strand, within GFF3171 at 611.992 kb on + strand, within GFF3171 at 611.992 kb on + strand, within GFF3171 at 612.038 kb on - strand, within GFF3171 at 612.038 kb on - strand, within GFF3171 at 612.038 kb on - strand, within GFF3171 at 612.079 kb on + strand, within GFF3171 at 612.169 kb on + strand, within GFF3171 at 612.170 kb on - strand, within GFF3171 at 612.394 kb on + strand, within GFF3171 at 612.394 kb on + strand, within GFF3171 at 612.394 kb on + strand, within GFF3171 at 612.395 kb on - strand, within GFF3171 at 612.395 kb on - strand, within GFF3171 at 612.544 kb on + strand, within GFF3171 at 612.544 kb on + strand, within GFF3171 at 612.568 kb on + strand, within GFF3171 at 612.569 kb on - strand, within GFF3171 at 612.569 kb on - strand, within GFF3171 at 612.569 kb on - strand, within GFF3171 at 612.658 kb on + strand, within GFF3171 at 612.658 kb on + strand, within GFF3171 at 612.659 kb on - strand, within GFF3171 at 612.715 kb on + strand at 612.715 kb on + strand at 612.755 kb on - strand at 612.755 kb on - strand at 612.755 kb on - strand at 612.755 kb on - strand at 612.987 kb on + strand at 612.987 kb on + strand at 612.987 kb on + strand at 612.987 kb on + strand at 612.987 kb on + strand at 612.987 kb on + strand at 612.988 kb on - strand at 612.988 kb on - strand at 612.988 kb on - strand at 612.988 kb on - strand at 612.988 kb on - strand at 612.988 kb on - strand at 612.988 kb on - strand at 613.318 kb on + strand at 613.318 kb on + strand at 613.318 kb on + strand at 613.318 kb on + strand at 613.318 kb on + strand at 613.318 kb on + strand at 613.319 kb on - strand at 613.319 kb on - strand at 613.319 kb on - strand at 613.319 kb on - strand at 613.541 kb on - strand, within GFF3173 at 613.765 kb on + strand, within GFF3173 at 613.765 kb on + strand, within GFF3173 at 613.765 kb on + strand, within GFF3173 at 613.766 kb on - strand, within GFF3173
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 610,561 - GFF3169 0.87 +0.1 610,656 + -0.5 610,802 + -0.5 610,803 - +0.2 610,803 - -0.6 610,804 + +0.4 610,805 - +0.6 611,561 - +0.7 611,603 - +0.3 611,811 + GFF3171 0.21 -0.9 611,812 - GFF3171 0.21 +1.5 611,860 + GFF3171 0.25 +0.1 611,992 + GFF3171 0.35 -1.3 611,992 + GFF3171 0.35 -0.0 612,038 - GFF3171 0.39 -0.7 612,038 - GFF3171 0.39 -0.9 612,038 - GFF3171 0.39 +0.7 612,079 + GFF3171 0.42 -0.3 612,169 + GFF3171 0.50 +0.1 612,170 - GFF3171 0.50 -0.9 612,394 + GFF3171 0.68 -0.6 612,394 + GFF3171 0.68 -0.5 612,394 + GFF3171 0.68 -1.0 612,395 - GFF3171 0.68 -0.5 612,395 - GFF3171 0.68 -0.0 612,544 + GFF3171 0.80 -1.6 612,544 + GFF3171 0.80 -0.4 612,568 + GFF3171 0.82 +0.9 612,569 - GFF3171 0.82 -0.7 612,569 - GFF3171 0.82 -1.4 612,569 - GFF3171 0.82 -0.1 612,658 + GFF3171 0.90 -1.0 612,658 + GFF3171 0.90 -0.2 612,659 - GFF3171 0.90 +2.3 612,715 + +0.2 612,715 + +0.4 612,755 - +0.3 612,755 - +1.7 612,755 - -0.9 612,755 - -0.9 612,987 + -0.3 612,987 + -0.4 612,987 + -0.9 612,987 + -0.3 612,987 + -0.6 612,987 + -0.4 612,988 - +0.5 612,988 - +0.7 612,988 - -0.3 612,988 - +1.1 612,988 - -1.8 612,988 - +0.1 612,988 - +0.0 613,318 + -0.4 613,318 + -0.3 613,318 + +0.4 613,318 + -0.3 613,318 + -0.0 613,318 + -0.5 613,319 - -0.3 613,319 - -0.3 613,319 - -0.1 613,319 - +0.1 613,541 - GFF3173 0.23 +0.5 613,765 + GFF3173 0.51 -0.3 613,765 + GFF3173 0.51 +0.4 613,765 + GFF3173 0.51 -0.6 613,766 - GFF3173 0.51 -0.7
Or see this region's nucleotide sequence