Strain Fitness in Variovorax sp. SCN45 around GFF317

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF315 and GFF316 are separated by 16 nucleotidesGFF316 and GFF317 are separated by 5 nucleotidesGFF317 and GFF318 are separated by 98 nucleotides GFF315 - FIGfam138462: Acyl-CoA synthetase, AMP-(fatty) acid ligase, at 348,175 to 349,887 GFF315 GFF316 - Transmembrane protein, at 349,904 to 350,548 GFF316 GFF317 - Acyl carrier protein, at 350,554 to 350,865 GFF317 GFF318 - Uncharacterized protein YjgR, at 350,964 to 352,481 GFF318 Position (kb) 350 351Strain fitness (log2 ratio) -2 -1 0 1 2at 349.712 kb on + strand, within GFF315at 349.713 kb on - strand, within GFF315at 349.944 kb on + strandat 349.944 kb on + strandat 349.944 kb on + strandat 349.944 kb on + strandat 349.945 kb on - strandat 349.945 kb on - strandat 349.945 kb on - strandat 349.945 kb on - strandat 349.945 kb on - strandat 349.945 kb on - strandat 349.945 kb on - strandat 349.975 kb on + strand, within GFF316at 349.975 kb on + strand, within GFF316at 349.975 kb on + strand, within GFF316at 349.975 kb on + strand, within GFF316at 349.975 kb on + strand, within GFF316at 349.975 kb on + strand, within GFF316at 349.975 kb on + strand, within GFF316at 349.976 kb on - strand, within GFF316at 349.976 kb on - strand, within GFF316at 349.976 kb on - strand, within GFF316at 350.097 kb on + strand, within GFF316at 350.097 kb on + strand, within GFF316at 350.097 kb on + strand, within GFF316at 350.097 kb on + strand, within GFF316at 350.097 kb on + strand, within GFF316at 350.097 kb on + strand, within GFF316at 350.097 kb on + strand, within GFF316at 350.097 kb on + strand, within GFF316at 350.098 kb on - strand, within GFF316at 350.098 kb on - strand, within GFF316at 350.098 kb on - strand, within GFF316at 350.098 kb on - strand, within GFF316at 350.098 kb on - strand, within GFF316at 350.098 kb on - strand, within GFF316at 350.098 kb on - strand, within GFF316at 350.133 kb on + strand, within GFF316at 350.133 kb on + strand, within GFF316at 350.134 kb on - strand, within GFF316at 350.134 kb on - strand, within GFF316at 350.134 kb on - strand, within GFF316at 350.134 kb on - strand, within GFF316at 350.134 kb on - strand, within GFF316at 350.166 kb on + strand, within GFF316at 350.167 kb on - strand, within GFF316at 350.167 kb on - strand, within GFF316at 350.167 kb on - strand, within GFF316at 350.298 kb on + strand, within GFF316at 350.298 kb on + strand, within GFF316at 350.298 kb on + strand, within GFF316at 350.298 kb on + strand, within GFF316at 350.298 kb on + strand, within GFF316at 350.298 kb on + strand, within GFF316at 350.298 kb on + strand, within GFF316at 350.298 kb on + strand, within GFF316at 350.298 kb on + strand, within GFF316at 350.298 kb on + strand, within GFF316at 350.298 kb on + strand, within GFF316at 350.298 kb on + strand, within GFF316at 350.299 kb on - strand, within GFF316at 350.299 kb on - strand, within GFF316at 350.299 kb on - strand, within GFF316at 350.299 kb on - strand, within GFF316at 350.299 kb on - strand, within GFF316at 350.299 kb on - strand, within GFF316at 350.299 kb on - strand, within GFF316at 350.299 kb on - strand, within GFF316at 350.299 kb on - strand, within GFF316at 350.299 kb on - strand, within GFF316at 350.299 kb on - strand, within GFF316at 350.299 kb on - strand, within GFF316at 350.299 kb on - strand, within GFF316at 350.502 kb on + strandat 350.502 kb on + strandat 350.503 kb on - strandat 350.503 kb on - strandat 350.503 kb on - strandat 350.503 kb on - strandat 350.503 kb on - strandat 350.503 kb on - strandat 350.503 kb on - strandat 350.503 kb on - strandat 350.559 kb on + strandat 350.560 kb on - strandat 350.560 kb on - strandat 350.720 kb on + strand, within GFF317at 350.721 kb on - strand, within GFF317at 350.721 kb on - strand, within GFF317at 350.851 kb on + strandat 350.851 kb on + strandat 350.851 kb on + strandat 350.852 kb on - strandat 350.852 kb on - strandat 350.880 kb on + strandat 350.880 kb on + strandat 350.880 kb on + strandat 350.880 kb on + strandat 350.881 kb on - strandat 350.881 kb on - strandat 350.881 kb on - strandat 350.894 kb on - strandat 350.914 kb on + strandat 350.914 kb on + strandat 350.915 kb on - strandat 350.915 kb on - strandat 350.915 kb on - strandat 350.931 kb on + strandat 350.931 kb on + strandat 350.932 kb on - strandat 350.946 kb on + strandat 350.946 kb on + strandat 350.946 kb on + strandat 350.946 kb on + strandat 350.946 kb on + strandat 350.946 kb on + strandat 350.947 kb on - strandat 350.947 kb on - strandat 350.947 kb on - strandat 350.963 kb on + strandat 350.963 kb on + strandat 350.963 kb on + strandat 350.963 kb on + strandat 350.963 kb on + strandat 350.964 kb on - strandat 350.964 kb on - strandat 351.403 kb on + strand, within GFF318at 351.403 kb on + strand, within GFF318at 351.403 kb on + strand, within GFF318at 351.403 kb on + strand, within GFF318at 351.404 kb on - strand, within GFF318at 351.404 kb on - strand, within GFF318at 351.404 kb on - strand, within GFF318at 351.441 kb on + strand, within GFF318at 351.441 kb on + strand, within GFF318at 351.441 kb on + strand, within GFF318at 351.441 kb on + strand, within GFF318at 351.441 kb on + strand, within GFF318at 351.441 kb on + strand, within GFF318at 351.441 kb on + strand, within GFF318at 351.442 kb on - strand, within GFF318at 351.442 kb on - strand, within GFF318at 351.442 kb on - strand, within GFF318at 351.442 kb on - strand, within GFF318at 351.442 kb on - strand, within GFF318at 351.442 kb on - strand, within GFF318at 351.442 kb on - strand, within GFF318at 351.663 kb on + strand, within GFF318at 351.664 kb on - strand, within GFF318at 351.664 kb on - strand, within GFF318at 351.664 kb on - strand, within GFF318at 351.664 kb on - strand, within GFF318at 351.664 kb on - strand, within GFF318at 351.664 kb on - strand, within GFF318at 351.852 kb on + strand, within GFF318at 351.852 kb on + strand, within GFF318at 351.852 kb on + strand, within GFF318at 351.852 kb on + strand, within GFF318at 351.853 kb on - strand, within GFF318

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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349,712 + GFF315 0.90 -0.6
349,713 - GFF315 0.90 -0.4
349,944 + -0.4
349,944 + -1.5
349,944 + -0.4
349,944 + -0.8
349,945 - +0.3
349,945 - -0.7
349,945 - -0.3
349,945 - +0.4
349,945 - -1.3
349,945 - -0.1
349,945 - +1.0
349,975 + GFF316 0.11 +1.9
349,975 + GFF316 0.11 +0.1
349,975 + GFF316 0.11 +1.0
349,975 + GFF316 0.11 -0.3
349,975 + GFF316 0.11 -1.3
349,975 + GFF316 0.11 -0.1
349,975 + GFF316 0.11 -0.5
349,976 - GFF316 0.11 +0.5
349,976 - GFF316 0.11 +0.5
349,976 - GFF316 0.11 -0.7
350,097 + GFF316 0.30 -0.0
350,097 + GFF316 0.30 -2.0
350,097 + GFF316 0.30 +0.5
350,097 + GFF316 0.30 +0.4
350,097 + GFF316 0.30 +0.5
350,097 + GFF316 0.30 +0.5
350,097 + GFF316 0.30 +0.1
350,097 + GFF316 0.30 +0.1
350,098 - GFF316 0.30 +1.0
350,098 - GFF316 0.30 -1.5
350,098 - GFF316 0.30 +0.2
350,098 - GFF316 0.30 -0.8
350,098 - GFF316 0.30 -1.3
350,098 - GFF316 0.30 +0.5
350,098 - GFF316 0.30 +0.7
350,133 + GFF316 0.36 -0.2
350,133 + GFF316 0.36 -1.8
350,134 - GFF316 0.36 -0.0
350,134 - GFF316 0.36 -1.6
350,134 - GFF316 0.36 +0.2
350,134 - GFF316 0.36 +0.5
350,134 - GFF316 0.36 +0.1
350,166 + GFF316 0.41 -0.0
350,167 - GFF316 0.41 -0.4
350,167 - GFF316 0.41 -0.5
350,167 - GFF316 0.41 -0.3
350,298 + GFF316 0.61 -0.7
350,298 + GFF316 0.61 -0.0
350,298 + GFF316 0.61 -0.3
350,298 + GFF316 0.61 -0.5
350,298 + GFF316 0.61 +0.5
350,298 + GFF316 0.61 -1.0
350,298 + GFF316 0.61 -1.6
350,298 + GFF316 0.61 -0.3
350,298 + GFF316 0.61 -0.2
350,298 + GFF316 0.61 -0.3
350,298 + GFF316 0.61 -0.4
350,298 + GFF316 0.61 +0.1
350,299 - GFF316 0.61 -0.4
350,299 - GFF316 0.61 -0.2
350,299 - GFF316 0.61 -0.3
350,299 - GFF316 0.61 +0.3
350,299 - GFF316 0.61 +0.6
350,299 - GFF316 0.61 -0.3
350,299 - GFF316 0.61 -0.5
350,299 - GFF316 0.61 -0.0
350,299 - GFF316 0.61 -0.9
350,299 - GFF316 0.61 -0.0
350,299 - GFF316 0.61 -0.2
350,299 - GFF316 0.61 +1.0
350,299 - GFF316 0.61 +1.0
350,502 + -0.0
350,502 + -0.3
350,503 - +0.2
350,503 - +1.5
350,503 - +1.5
350,503 - -0.5
350,503 - -1.0
350,503 - -0.4
350,503 - -0.2
350,503 - -0.9
350,559 + +0.6
350,560 - +0.1
350,560 - -0.8
350,720 + GFF317 0.53 -0.0
350,721 - GFF317 0.54 +0.7
350,721 - GFF317 0.54 +0.5
350,851 + +0.3
350,851 + +0.0
350,851 + -0.9
350,852 - -0.0
350,852 - +0.3
350,880 + +0.1
350,880 + -1.0
350,880 + +0.2
350,880 + -1.3
350,881 - -0.5
350,881 - +0.2
350,881 - -0.1
350,894 - +1.4
350,914 + -0.1
350,914 + +0.4
350,915 - -1.2
350,915 - -0.2
350,915 - -0.3
350,931 + +0.0
350,931 + +0.0
350,932 - +0.0
350,946 + -0.6
350,946 + -0.3
350,946 + +0.5
350,946 + +0.6
350,946 + -0.3
350,946 + -0.6
350,947 - -0.0
350,947 - -0.9
350,947 - +0.0
350,963 + -0.7
350,963 + -0.7
350,963 + +0.5
350,963 + +0.1
350,963 + -1.0
350,964 - +0.0
350,964 - +0.2
351,403 + GFF318 0.29 -0.3
351,403 + GFF318 0.29 -1.5
351,403 + GFF318 0.29 -0.4
351,403 + GFF318 0.29 -0.5
351,404 - GFF318 0.29 -0.6
351,404 - GFF318 0.29 +0.5
351,404 - GFF318 0.29 +0.2
351,441 + GFF318 0.31 -1.3
351,441 + GFF318 0.31 -1.7
351,441 + GFF318 0.31 -0.7
351,441 + GFF318 0.31 -0.9
351,441 + GFF318 0.31 +1.3
351,441 + GFF318 0.31 +0.2
351,441 + GFF318 0.31 +0.3
351,442 - GFF318 0.31 +0.8
351,442 - GFF318 0.31 +0.3
351,442 - GFF318 0.31 -0.5
351,442 - GFF318 0.31 -1.2
351,442 - GFF318 0.31 -0.2
351,442 - GFF318 0.31 -1.4
351,442 - GFF318 0.31 +0.2
351,663 + GFF318 0.46 +0.1
351,664 - GFF318 0.46 -0.5
351,664 - GFF318 0.46 -0.4
351,664 - GFF318 0.46 -2.3
351,664 - GFF318 0.46 +0.2
351,664 - GFF318 0.46 +0.1
351,664 - GFF318 0.46 -1.0
351,852 + GFF318 0.58 -0.3
351,852 + GFF318 0.58 -0.2
351,852 + GFF318 0.58 -0.4
351,852 + GFF318 0.58 -0.5
351,853 - GFF318 0.59 -0.9

Or see this region's nucleotide sequence