Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3161 and GFF3162 are separated by 7 nucleotides GFF3162 and GFF3163 are separated by 161 nucleotides
GFF3161 - Acetate kinase (EC 2.7.2.1), at 599,094 to 600,299
GFF3161
GFF3162 - Sulfoacetaldehyde acetyltransferase (EC 2.3.3.15), at 600,307 to 602,130
GFF3162
GFF3163 - Transcriptional regulator, IclR family, at 602,292 to 603,125
GFF3163
Position (kb) 600
601
602
603 Strain fitness (log2 ratio) -2
-1
0
1 at 599.525 kb on - strand, within GFF3161 at 600.314 kb on + strand at 600.315 kb on - strand at 600.315 kb on - strand at 600.323 kb on + strand at 600.323 kb on + strand at 600.323 kb on + strand at 600.566 kb on + strand, within GFF3162 at 600.699 kb on - strand, within GFF3162 at 600.818 kb on + strand, within GFF3162 at 600.818 kb on + strand, within GFF3162 at 600.818 kb on + strand, within GFF3162 at 600.818 kb on + strand, within GFF3162 at 600.819 kb on - strand, within GFF3162 at 600.819 kb on - strand, within GFF3162 at 600.920 kb on + strand, within GFF3162 at 600.920 kb on + strand, within GFF3162 at 600.921 kb on - strand, within GFF3162 at 601.329 kb on - strand, within GFF3162 at 601.589 kb on + strand, within GFF3162 at 601.595 kb on + strand, within GFF3162 at 601.608 kb on + strand, within GFF3162 at 601.665 kb on - strand, within GFF3162 at 601.703 kb on + strand, within GFF3162 at 601.703 kb on + strand, within GFF3162 at 601.703 kb on + strand, within GFF3162 at 601.817 kb on + strand, within GFF3162 at 601.904 kb on + strand, within GFF3162 at 601.905 kb on - strand, within GFF3162 at 601.979 kb on + strand at 602.216 kb on + strand at 602.217 kb on - strand at 602.218 kb on + strand at 602.218 kb on + strand at 602.218 kb on + strand at 602.218 kb on + strand at 602.218 kb on + strand at 602.218 kb on + strand at 602.219 kb on - strand at 602.219 kb on - strand at 602.219 kb on - strand at 602.219 kb on - strand at 602.219 kb on - strand at 602.219 kb on - strand at 602.219 kb on - strand at 602.219 kb on - strand at 602.291 kb on + strand at 602.526 kb on + strand, within GFF3163 at 602.676 kb on + strand, within GFF3163 at 602.676 kb on + strand, within GFF3163 at 602.716 kb on - strand, within GFF3163 at 602.832 kb on + strand, within GFF3163 at 602.833 kb on - strand, within GFF3163 at 602.833 kb on - strand, within GFF3163
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 599,525 - GFF3161 0.36 -0.3 600,314 + +0.1 600,315 - -1.0 600,315 - -0.0 600,323 + -0.7 600,323 + +0.7 600,323 + +0.0 600,566 + GFF3162 0.14 -0.7 600,699 - GFF3162 0.21 -0.3 600,818 + GFF3162 0.28 +0.3 600,818 + GFF3162 0.28 -1.1 600,818 + GFF3162 0.28 -1.3 600,818 + GFF3162 0.28 -0.1 600,819 - GFF3162 0.28 -0.7 600,819 - GFF3162 0.28 +1.0 600,920 + GFF3162 0.34 -0.3 600,920 + GFF3162 0.34 -0.1 600,921 - GFF3162 0.34 -0.4 601,329 - GFF3162 0.56 -0.6 601,589 + GFF3162 0.70 +0.1 601,595 + GFF3162 0.71 -1.2 601,608 + GFF3162 0.71 +0.1 601,665 - GFF3162 0.74 -1.6 601,703 + GFF3162 0.77 -0.4 601,703 + GFF3162 0.77 -0.8 601,703 + GFF3162 0.77 -1.2 601,817 + GFF3162 0.83 +1.4 601,904 + GFF3162 0.88 +0.3 601,905 - GFF3162 0.88 +0.7 601,979 + +0.4 602,216 + -0.3 602,217 - +1.0 602,218 + -0.8 602,218 + +0.3 602,218 + +0.3 602,218 + -0.3 602,218 + -0.9 602,218 + -0.5 602,219 - -0.0 602,219 - -0.7 602,219 - -1.3 602,219 - -2.2 602,219 - -0.4 602,219 - -0.2 602,219 - -0.7 602,219 - +0.5 602,291 + +1.1 602,526 + GFF3163 0.28 -0.9 602,676 + GFF3163 0.46 -0.9 602,676 + GFF3163 0.46 +0.1 602,716 - GFF3163 0.51 -0.2 602,832 + GFF3163 0.65 -1.6 602,833 - GFF3163 0.65 -0.3 602,833 - GFF3163 0.65 -0.3
Or see this region's nucleotide sequence