Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3144 and GFF3145 are separated by 2 nucleotides GFF3145 and GFF3146 are separated by 43 nucleotides GFF3146 and GFF3147 are separated by 126 nucleotides
GFF3144 - hypothetical protein, at 577,866 to 579,218
GFF3144
GFF3145 - Two-component system response regulator QseB, at 579,221 to 579,847
GFF3145
GFF3146 - no description, at 579,891 to 580,481
GFF3146
GFF3147 - hypothetical protein, at 580,608 to 581,993
GFF3147
Position (kb) 579
580
581 Strain fitness (log2 ratio) -2
-1
0
1
2 at 578.929 kb on + strand, within GFF3144 at 578.930 kb on - strand, within GFF3144 at 579.136 kb on + strand at 579.136 kb on + strand at 579.137 kb on - strand at 579.137 kb on - strand at 579.137 kb on - strand at 579.292 kb on - strand, within GFF3145 at 579.343 kb on - strand, within GFF3145 at 579.349 kb on - strand, within GFF3145 at 579.585 kb on + strand, within GFF3145 at 579.585 kb on + strand, within GFF3145 at 579.585 kb on + strand, within GFF3145 at 579.866 kb on + strand at 579.866 kb on + strand at 579.938 kb on - strand at 580.210 kb on + strand, within GFF3146 at 580.210 kb on + strand, within GFF3146 at 580.210 kb on + strand, within GFF3146 at 580.211 kb on - strand, within GFF3146 at 580.464 kb on + strand at 580.513 kb on - strand at 580.513 kb on - strand at 580.513 kb on - strand at 580.523 kb on + strand at 580.523 kb on + strand at 580.523 kb on + strand at 580.524 kb on - strand at 580.524 kb on - strand at 580.558 kb on - strand at 580.699 kb on - strand at 580.699 kb on - strand at 581.016 kb on + strand, within GFF3147 at 581.016 kb on + strand, within GFF3147 at 581.017 kb on - strand, within GFF3147 at 581.211 kb on + strand, within GFF3147
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 578,929 + GFF3144 0.79 -0.6 578,930 - GFF3144 0.79 -0.3 579,136 + +0.1 579,136 + +0.3 579,137 - -0.6 579,137 - -0.3 579,137 - -1.3 579,292 - GFF3145 0.11 -0.2 579,343 - GFF3145 0.19 -0.1 579,349 - GFF3145 0.20 +1.4 579,585 + GFF3145 0.58 -0.2 579,585 + GFF3145 0.58 +2.1 579,585 + GFF3145 0.58 +0.6 579,866 + +1.4 579,866 + +1.7 579,938 - +0.5 580,210 + GFF3146 0.54 -2.4 580,210 + GFF3146 0.54 -0.6 580,210 + GFF3146 0.54 -1.8 580,211 - GFF3146 0.54 +2.5 580,464 + +0.4 580,513 - -0.1 580,513 - -0.3 580,513 - +0.4 580,523 + -0.4 580,523 + +0.4 580,523 + -0.2 580,524 - -0.0 580,524 - -0.4 580,558 - -1.1 580,699 - +1.5 580,699 - -0.5 581,016 + GFF3147 0.29 -0.7 581,016 + GFF3147 0.29 +0.7 581,017 - GFF3147 0.30 +0.8 581,211 + GFF3147 0.44 -0.2
Or see this region's nucleotide sequence