Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3128 and GFF3129 are separated by 26 nucleotides GFF3129 and GFF3130 are separated by 24 nucleotides GFF3130 and GFF3131 are separated by 4 nucleotides
GFF3128 - T6SS PAAR-repeat protein / RhaS protein, at 554,159 to 558,616
GFF3128
GFF3129 - no description, at 558,643 to 559,086
GFF3129
GFF3130 - hypothetical protein, at 559,111 to 559,554
GFF3130
GFF3131 - VgrG protein, at 559,559 to 562,732
GFF3131
Position (kb) 559
560 Strain fitness (log2 ratio) -2
-1
0
1 at 558.287 kb on + strand at 558.288 kb on - strand at 559.079 kb on + strand at 559.112 kb on + strand at 559.113 kb on - strand at 559.202 kb on + strand, within GFF3130 at 559.202 kb on + strand, within GFF3130 at 559.576 kb on - strand at 559.603 kb on - strand at 559.611 kb on + strand at 559.650 kb on + strand at 559.650 kb on + strand at 559.651 kb on - strand at 559.708 kb on - strand at 559.933 kb on - strand, within GFF3131 at 559.995 kb on + strand, within GFF3131 at 559.995 kb on + strand, within GFF3131 at 559.996 kb on - strand, within GFF3131 at 559.996 kb on - strand, within GFF3131 at 559.996 kb on - strand, within GFF3131
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 558,287 + +0.1 558,288 - -0.4 559,079 + +0.2 559,112 + -0.5 559,113 - -1.1 559,202 + GFF3130 0.20 -0.9 559,202 + GFF3130 0.20 -1.9 559,576 - +0.5 559,603 - +1.4 559,611 + -0.1 559,650 + +1.4 559,650 + -2.1 559,651 - +1.1 559,708 - -1.6 559,933 - GFF3131 0.12 -0.4 559,995 + GFF3131 0.14 -0.4 559,995 + GFF3131 0.14 -0.7 559,996 - GFF3131 0.14 -1.0 559,996 - GFF3131 0.14 +0.4 559,996 - GFF3131 0.14 -0.1
Or see this region's nucleotide sequence