Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3016 and GFF3017 are separated by 13 nucleotides GFF3017 and GFF3018 are separated by 5 nucleotides
GFF3016 - T6SS component TssG (ImpH/VasB), at 443,069 to 444,082
GFF3016
GFF3017 - T6SS AAA+ chaperone ClpV (TssH), at 444,096 to 446,837
GFF3017
GFF3018 - VgrG protein, at 446,843 to 448,783
GFF3018
Position (kb) 444
445
446
447 Strain fitness (log2 ratio) -1
0
1 at 444.096 kb on - strand at 444.096 kb on - strand at 444.192 kb on + strand at 444.732 kb on + strand, within GFF3017 at 445.197 kb on + strand, within GFF3017 at 445.197 kb on + strand, within GFF3017 at 445.198 kb on - strand, within GFF3017 at 445.198 kb on - strand, within GFF3017 at 445.206 kb on + strand, within GFF3017 at 445.206 kb on + strand, within GFF3017 at 445.207 kb on - strand, within GFF3017 at 445.207 kb on - strand, within GFF3017 at 445.380 kb on + strand, within GFF3017 at 445.380 kb on + strand, within GFF3017 at 445.380 kb on + strand, within GFF3017 at 445.381 kb on - strand, within GFF3017 at 446.095 kb on - strand, within GFF3017 at 446.239 kb on - strand, within GFF3017 at 447.092 kb on + strand, within GFF3018 at 447.092 kb on + strand, within GFF3018 at 447.092 kb on + strand, within GFF3018 at 447.093 kb on - strand, within GFF3018 at 447.093 kb on - strand, within GFF3018 at 447.122 kb on + strand, within GFF3018 at 447.122 kb on + strand, within GFF3018 at 447.122 kb on + strand, within GFF3018 at 447.182 kb on + strand, within GFF3018 at 447.183 kb on - strand, within GFF3018 at 447.183 kb on - strand, within GFF3018 at 447.266 kb on + strand, within GFF3018 at 447.266 kb on + strand, within GFF3018 at 447.266 kb on + strand, within GFF3018 at 447.266 kb on + strand, within GFF3018 at 447.267 kb on - strand, within GFF3018 at 447.267 kb on - strand, within GFF3018 at 447.293 kb on + strand, within GFF3018 at 447.351 kb on - strand, within GFF3018 at 447.479 kb on + strand, within GFF3018 at 447.539 kb on + strand, within GFF3018 at 447.608 kb on + strand, within GFF3018 at 447.782 kb on + strand, within GFF3018 at 447.782 kb on + strand, within GFF3018 at 447.782 kb on + strand, within GFF3018 at 447.782 kb on + strand, within GFF3018 at 447.782 kb on + strand, within GFF3018 at 447.783 kb on - strand, within GFF3018 at 447.824 kb on + strand, within GFF3018 at 447.824 kb on + strand, within GFF3018 at 447.824 kb on + strand, within GFF3018 at 447.825 kb on - strand, within GFF3018 at 447.825 kb on - strand, within GFF3018 at 447.825 kb on - strand, within GFF3018 at 447.825 kb on - strand, within GFF3018
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 444,096 - -0.9 444,096 - +0.3 444,192 + -0.1 444,732 + GFF3017 0.23 +0.2 445,197 + GFF3017 0.40 +0.3 445,197 + GFF3017 0.40 +0.2 445,198 - GFF3017 0.40 +0.0 445,198 - GFF3017 0.40 +0.1 445,206 + GFF3017 0.40 -0.0 445,206 + GFF3017 0.40 -0.6 445,207 - GFF3017 0.41 +1.3 445,207 - GFF3017 0.41 +0.0 445,380 + GFF3017 0.47 -1.6 445,380 + GFF3017 0.47 +0.9 445,380 + GFF3017 0.47 +0.7 445,381 - GFF3017 0.47 +0.4 446,095 - GFF3017 0.73 -0.0 446,239 - GFF3017 0.78 -0.4 447,092 + GFF3018 0.13 -1.0 447,092 + GFF3018 0.13 +0.7 447,092 + GFF3018 0.13 +0.2 447,093 - GFF3018 0.13 -0.0 447,093 - GFF3018 0.13 -0.3 447,122 + GFF3018 0.14 +0.7 447,122 + GFF3018 0.14 -0.1 447,122 + GFF3018 0.14 -0.3 447,182 + GFF3018 0.17 -0.9 447,183 - GFF3018 0.18 -0.8 447,183 - GFF3018 0.18 +0.4 447,266 + GFF3018 0.22 -0.3 447,266 + GFF3018 0.22 -1.1 447,266 + GFF3018 0.22 -0.4 447,266 + GFF3018 0.22 -0.0 447,267 - GFF3018 0.22 +0.1 447,267 - GFF3018 0.22 -0.6 447,293 + GFF3018 0.23 -0.7 447,351 - GFF3018 0.26 -0.5 447,479 + GFF3018 0.33 -0.8 447,539 + GFF3018 0.36 +0.2 447,608 + GFF3018 0.39 +0.4 447,782 + GFF3018 0.48 +0.2 447,782 + GFF3018 0.48 -0.7 447,782 + GFF3018 0.48 +1.7 447,782 + GFF3018 0.48 -0.6 447,782 + GFF3018 0.48 -0.2 447,783 - GFF3018 0.48 -0.2 447,824 + GFF3018 0.51 +0.1 447,824 + GFF3018 0.51 +0.1 447,824 + GFF3018 0.51 +0.1 447,825 - GFF3018 0.51 -1.1 447,825 - GFF3018 0.51 -0.6 447,825 - GFF3018 0.51 -0.1 447,825 - GFF3018 0.51 +0.7
Or see this region's nucleotide sequence