Strain Fitness in Variovorax sp. SCN45 around GFF2898

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2896 and GFF2897 are separated by 28 nucleotidesGFF2897 and GFF2898 are separated by 25 nucleotidesGFF2898 and GFF2899 are separated by 34 nucleotidesGFF2899 and GFF2900 are separated by 162 nucleotides GFF2896 - Methionine synthase II (cobalamin-independent), at 321,913 to 323,034 GFF2896 GFF2897 - Glutathione S-transferase-like( EC:2.5.1.18 ), at 323,063 to 323,737 GFF2897 GFF2898 - Cardiolipin synthase, bacterial type ClsA, at 323,763 to 325,145 GFF2898 GFF2899 - no description, at 325,180 to 325,323 GFF2899 GFF2900 - Subtilisin-like serine proteases, at 325,486 to 327,108 GFF2900 Position (kb) 323 324 325 326Strain fitness (log2 ratio) -2 -1 0 1 2at 322.891 kb on + strand, within GFF2896at 322.891 kb on + strand, within GFF2896at 322.891 kb on + strand, within GFF2896at 322.891 kb on + strand, within GFF2896at 322.892 kb on - strand, within GFF2896at 322.892 kb on - strand, within GFF2896at 322.892 kb on - strand, within GFF2896at 322.892 kb on - strand, within GFF2896at 322.892 kb on - strand, within GFF2896at 323.078 kb on + strandat 323.078 kb on + strandat 323.078 kb on + strandat 323.078 kb on + strandat 323.078 kb on + strandat 323.078 kb on + strandat 323.078 kb on + strandat 323.079 kb on - strandat 323.079 kb on - strandat 323.079 kb on - strandat 323.112 kb on + strandat 323.183 kb on + strand, within GFF2897at 323.184 kb on - strand, within GFF2897at 323.300 kb on + strand, within GFF2897at 323.301 kb on - strand, within GFF2897at 323.483 kb on + strand, within GFF2897at 323.484 kb on - strand, within GFF2897at 323.484 kb on - strand, within GFF2897at 323.486 kb on + strand, within GFF2897at 323.486 kb on + strand, within GFF2897at 323.486 kb on + strand, within GFF2897at 323.486 kb on + strand, within GFF2897at 323.486 kb on + strand, within GFF2897at 323.487 kb on - strand, within GFF2897at 323.522 kb on + strand, within GFF2897at 323.538 kb on - strand, within GFF2897at 323.561 kb on + strand, within GFF2897at 323.561 kb on + strand, within GFF2897at 323.561 kb on + strand, within GFF2897at 323.561 kb on + strand, within GFF2897at 323.562 kb on - strand, within GFF2897at 323.562 kb on - strand, within GFF2897at 323.562 kb on - strand, within GFF2897at 323.562 kb on - strand, within GFF2897at 323.562 kb on - strand, within GFF2897at 323.562 kb on - strand, within GFF2897at 323.562 kb on - strand, within GFF2897at 323.562 kb on - strand, within GFF2897at 323.562 kb on - strand, within GFF2897at 323.562 kb on - strand, within GFF2897at 323.562 kb on - strand, within GFF2897at 323.716 kb on - strandat 323.716 kb on - strandat 323.841 kb on + strandat 323.841 kb on + strandat 323.841 kb on + strandat 323.841 kb on + strandat 323.841 kb on + strandat 323.842 kb on - strandat 323.842 kb on - strandat 323.842 kb on - strandat 323.842 kb on - strandat 323.842 kb on - strandat 323.925 kb on + strand, within GFF2898at 323.925 kb on + strand, within GFF2898at 323.925 kb on + strand, within GFF2898at 323.925 kb on + strand, within GFF2898at 323.926 kb on - strand, within GFF2898at 323.926 kb on - strand, within GFF2898at 323.930 kb on - strand, within GFF2898at 323.943 kb on + strand, within GFF2898at 323.943 kb on + strand, within GFF2898at 323.943 kb on + strand, within GFF2898at 323.944 kb on - strand, within GFF2898at 323.944 kb on - strand, within GFF2898at 323.944 kb on - strand, within GFF2898at 323.944 kb on - strand, within GFF2898at 324.441 kb on + strand, within GFF2898at 324.441 kb on + strand, within GFF2898at 324.441 kb on + strand, within GFF2898at 324.724 kb on - strand, within GFF2898at 325.006 kb on - strand, within GFF2898at 325.006 kb on - strand, within GFF2898at 325.143 kb on + strandat 325.143 kb on + strandat 325.143 kb on + strandat 325.143 kb on + strandat 325.144 kb on - strandat 325.157 kb on + strandat 325.157 kb on + strandat 325.195 kb on + strand, within GFF2899at 325.200 kb on + strand, within GFF2899at 325.201 kb on - strand, within GFF2899at 325.201 kb on - strand, within GFF2899at 325.217 kb on - strand, within GFF2899at 325.597 kb on + strandat 325.597 kb on + strandat 325.597 kb on + strandat 325.598 kb on - strandat 325.598 kb on - strandat 325.598 kb on - strandat 325.708 kb on + strand, within GFF2900at 325.708 kb on + strand, within GFF2900at 325.708 kb on + strand, within GFF2900at 325.708 kb on + strand, within GFF2900at 325.708 kb on + strand, within GFF2900at 325.709 kb on - strand, within GFF2900at 325.709 kb on - strand, within GFF2900at 325.709 kb on - strand, within GFF2900at 325.709 kb on - strand, within GFF2900at 325.709 kb on - strand, within GFF2900at 325.709 kb on - strand, within GFF2900at 325.766 kb on - strand, within GFF2900at 325.906 kb on + strand, within GFF2900at 325.907 kb on - strand, within GFF2900at 325.907 kb on - strand, within GFF2900at 325.975 kb on + strand, within GFF2900at 325.975 kb on + strand, within GFF2900at 325.976 kb on - strand, within GFF2900at 325.978 kb on + strand, within GFF2900at 325.978 kb on + strand, within GFF2900at 325.978 kb on + strand, within GFF2900at 325.978 kb on + strand, within GFF2900at 325.978 kb on + strand, within GFF2900at 325.978 kb on + strand, within GFF2900at 325.979 kb on - strand, within GFF2900at 325.979 kb on - strand, within GFF2900at 325.979 kb on - strand, within GFF2900at 325.979 kb on - strand, within GFF2900at 325.979 kb on - strand, within GFF2900at 325.979 kb on - strand, within GFF2900at 325.979 kb on - strand, within GFF2900at 325.979 kb on - strand, within GFF2900at 325.979 kb on - strand, within GFF2900at 325.979 kb on - strand, within GFF2900at 325.979 kb on - strand, within GFF2900at 325.979 kb on - strand, within GFF2900at 325.979 kb on - strand, within GFF2900at 325.979 kb on - strand, within GFF2900at 325.979 kb on - strand, within GFF2900

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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322,891 + GFF2896 0.87 -0.8
322,891 + GFF2896 0.87 +1.4
322,891 + GFF2896 0.87 -0.0
322,891 + GFF2896 0.87 +0.6
322,892 - GFF2896 0.87 -0.5
322,892 - GFF2896 0.87 +1.4
322,892 - GFF2896 0.87 -1.2
322,892 - GFF2896 0.87 +0.5
322,892 - GFF2896 0.87 -0.4
323,078 + -1.2
323,078 + -0.4
323,078 + +1.7
323,078 + -0.2
323,078 + +1.7
323,078 + +0.0
323,078 + -0.6
323,079 - -1.3
323,079 - -0.2
323,079 - -0.4
323,112 + -0.6
323,183 + GFF2897 0.18 -0.9
323,184 - GFF2897 0.18 +0.4
323,300 + GFF2897 0.35 +0.3
323,301 - GFF2897 0.35 -0.5
323,483 + GFF2897 0.62 -0.2
323,484 - GFF2897 0.62 -0.1
323,484 - GFF2897 0.62 -0.3
323,486 + GFF2897 0.63 -0.5
323,486 + GFF2897 0.63 -0.9
323,486 + GFF2897 0.63 +1.7
323,486 + GFF2897 0.63 -0.8
323,486 + GFF2897 0.63 -0.7
323,487 - GFF2897 0.63 +0.2
323,522 + GFF2897 0.68 +0.7
323,538 - GFF2897 0.70 +0.7
323,561 + GFF2897 0.74 -1.5
323,561 + GFF2897 0.74 -0.3
323,561 + GFF2897 0.74 +1.0
323,561 + GFF2897 0.74 -0.0
323,562 - GFF2897 0.74 +0.3
323,562 - GFF2897 0.74 -0.2
323,562 - GFF2897 0.74 -1.6
323,562 - GFF2897 0.74 +0.2
323,562 - GFF2897 0.74 -0.5
323,562 - GFF2897 0.74 -0.6
323,562 - GFF2897 0.74 -0.3
323,562 - GFF2897 0.74 +0.2
323,562 - GFF2897 0.74 -0.6
323,562 - GFF2897 0.74 +0.2
323,562 - GFF2897 0.74 -0.5
323,716 - +0.7
323,716 - +0.7
323,841 + -1.0
323,841 + -1.2
323,841 + -0.6
323,841 + -0.6
323,841 + +1.3
323,842 - -0.8
323,842 - -0.2
323,842 - -0.3
323,842 - +0.3
323,842 - +0.9
323,925 + GFF2898 0.12 +0.0
323,925 + GFF2898 0.12 -0.3
323,925 + GFF2898 0.12 -1.6
323,925 + GFF2898 0.12 -0.3
323,926 - GFF2898 0.12 -0.4
323,926 - GFF2898 0.12 -0.2
323,930 - GFF2898 0.12 -0.5
323,943 + GFF2898 0.13 -0.1
323,943 + GFF2898 0.13 +0.8
323,943 + GFF2898 0.13 +1.2
323,944 - GFF2898 0.13 -0.1
323,944 - GFF2898 0.13 -0.2
323,944 - GFF2898 0.13 +0.2
323,944 - GFF2898 0.13 +0.7
324,441 + GFF2898 0.49 -0.2
324,441 + GFF2898 0.49 -0.9
324,441 + GFF2898 0.49 -0.5
324,724 - GFF2898 0.69 +0.2
325,006 - GFF2898 0.90 +0.3
325,006 - GFF2898 0.90 -0.4
325,143 + +1.0
325,143 + +0.3
325,143 + +0.8
325,143 + -0.6
325,144 - -0.4
325,157 + -0.6
325,157 + +0.5
325,195 + GFF2899 0.10 -0.3
325,200 + GFF2899 0.14 +0.0
325,201 - GFF2899 0.15 -1.0
325,201 - GFF2899 0.15 -1.3
325,217 - GFF2899 0.26 -0.4
325,597 + +0.0
325,597 + -0.4
325,597 + -2.3
325,598 - +0.7
325,598 - -0.2
325,598 - -0.2
325,708 + GFF2900 0.14 -0.8
325,708 + GFF2900 0.14 +0.2
325,708 + GFF2900 0.14 -0.0
325,708 + GFF2900 0.14 +0.5
325,708 + GFF2900 0.14 -0.1
325,709 - GFF2900 0.14 -0.6
325,709 - GFF2900 0.14 +0.3
325,709 - GFF2900 0.14 +0.4
325,709 - GFF2900 0.14 -0.7
325,709 - GFF2900 0.14 -1.6
325,709 - GFF2900 0.14 +0.1
325,766 - GFF2900 0.17 -0.8
325,906 + GFF2900 0.26 +0.1
325,907 - GFF2900 0.26 +0.2
325,907 - GFF2900 0.26 -0.4
325,975 + GFF2900 0.30 -0.7
325,975 + GFF2900 0.30 -0.3
325,976 - GFF2900 0.30 +0.3
325,978 + GFF2900 0.30 -1.6
325,978 + GFF2900 0.30 +0.4
325,978 + GFF2900 0.30 +0.3
325,978 + GFF2900 0.30 -0.1
325,978 + GFF2900 0.30 -0.2
325,978 + GFF2900 0.30 +0.4
325,979 - GFF2900 0.30 -0.9
325,979 - GFF2900 0.30 -1.3
325,979 - GFF2900 0.30 +0.7
325,979 - GFF2900 0.30 +0.7
325,979 - GFF2900 0.30 -0.2
325,979 - GFF2900 0.30 +2.3
325,979 - GFF2900 0.30 +0.3
325,979 - GFF2900 0.30 +0.4
325,979 - GFF2900 0.30 +0.0
325,979 - GFF2900 0.30 -0.6
325,979 - GFF2900 0.30 -0.4
325,979 - GFF2900 0.30 +0.1
325,979 - GFF2900 0.30 +0.2
325,979 - GFF2900 0.30 +0.6
325,979 - GFF2900 0.30 -0.0

Or see this region's nucleotide sequence