Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2865 and GFF2866 are separated by 112 nucleotides GFF2866 and GFF2867 overlap by 4 nucleotides
GFF2865 - Uncharacterized MFS-type transporter, at 287,982 to 289,511
GFF2865
GFF2866 - Uncharacterized MFS-type transporter, at 289,624 to 290,787
GFF2866
GFF2867 - DNA recombination protein RmuC, at 290,784 to 292,151
GFF2867
Position (kb) 289
290
291 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 288.655 kb on + strand, within GFF2865 at 288.655 kb on + strand, within GFF2865 at 288.853 kb on + strand, within GFF2865 at 288.853 kb on + strand, within GFF2865 at 288.853 kb on + strand, within GFF2865 at 288.853 kb on + strand, within GFF2865 at 288.853 kb on + strand, within GFF2865 at 288.853 kb on + strand, within GFF2865 at 288.853 kb on + strand, within GFF2865 at 288.853 kb on + strand, within GFF2865 at 288.854 kb on - strand, within GFF2865 at 288.854 kb on - strand, within GFF2865 at 288.854 kb on - strand, within GFF2865 at 288.854 kb on - strand, within GFF2865 at 288.881 kb on + strand, within GFF2865 at 288.881 kb on + strand, within GFF2865 at 288.881 kb on + strand, within GFF2865 at 288.882 kb on - strand, within GFF2865 at 288.882 kb on - strand, within GFF2865 at 288.882 kb on - strand, within GFF2865 at 289.279 kb on + strand, within GFF2865 at 289.279 kb on + strand, within GFF2865 at 289.279 kb on + strand, within GFF2865 at 289.279 kb on + strand, within GFF2865 at 289.279 kb on + strand, within GFF2865 at 289.279 kb on + strand, within GFF2865 at 289.280 kb on - strand, within GFF2865 at 289.280 kb on - strand, within GFF2865 at 289.280 kb on - strand, within GFF2865 at 289.280 kb on - strand, within GFF2865 at 289.280 kb on - strand, within GFF2865 at 289.333 kb on + strand, within GFF2865 at 289.333 kb on + strand, within GFF2865 at 289.333 kb on + strand, within GFF2865 at 289.333 kb on + strand, within GFF2865 at 289.334 kb on - strand, within GFF2865 at 289.334 kb on - strand, within GFF2865 at 289.334 kb on - strand, within GFF2865 at 289.334 kb on - strand, within GFF2865 at 289.334 kb on - strand, within GFF2865 at 289.334 kb on - strand, within GFF2865 at 289.447 kb on + strand at 289.447 kb on + strand at 289.447 kb on + strand at 289.447 kb on + strand at 289.448 kb on - strand at 289.448 kb on - strand at 289.448 kb on - strand at 289.499 kb on + strand at 289.499 kb on + strand at 289.499 kb on + strand at 289.499 kb on + strand at 289.500 kb on - strand at 289.500 kb on - strand at 289.500 kb on - strand at 289.500 kb on - strand at 289.546 kb on - strand at 289.546 kb on - strand at 289.563 kb on + strand at 289.564 kb on - strand at 289.564 kb on - strand at 289.564 kb on - strand at 289.644 kb on + strand at 289.644 kb on + strand at 289.644 kb on + strand at 289.644 kb on + strand at 289.644 kb on + strand at 289.644 kb on + strand at 289.644 kb on + strand at 289.644 kb on + strand at 289.644 kb on + strand at 289.644 kb on + strand at 289.645 kb on - strand at 289.645 kb on - strand at 289.645 kb on - strand at 289.645 kb on - strand at 289.645 kb on - strand at 289.910 kb on + strand, within GFF2866 at 289.910 kb on + strand, within GFF2866 at 289.911 kb on - strand, within GFF2866 at 289.911 kb on - strand, within GFF2866 at 289.911 kb on - strand, within GFF2866 at 290.681 kb on + strand at 290.681 kb on + strand at 290.681 kb on + strand at 290.682 kb on - strand at 290.682 kb on - strand at 290.682 kb on - strand at 290.682 kb on - strand at 290.682 kb on - strand at 290.682 kb on - strand at 290.965 kb on + strand, within GFF2867 at 290.966 kb on - strand, within GFF2867 at 291.157 kb on + strand, within GFF2867 at 291.157 kb on + strand, within GFF2867 at 291.157 kb on + strand, within GFF2867 at 291.157 kb on + strand, within GFF2867 at 291.217 kb on + strand, within GFF2867 at 291.217 kb on + strand, within GFF2867 at 291.217 kb on + strand, within GFF2867 at 291.217 kb on + strand, within GFF2867 at 291.218 kb on - strand, within GFF2867 at 291.218 kb on - strand, within GFF2867 at 291.218 kb on - strand, within GFF2867 at 291.218 kb on - strand, within GFF2867 at 291.218 kb on - strand, within GFF2867 at 291.218 kb on - strand, within GFF2867 at 291.328 kb on + strand, within GFF2867 at 291.328 kb on + strand, within GFF2867 at 291.328 kb on + strand, within GFF2867 at 291.328 kb on + strand, within GFF2867 at 291.457 kb on + strand, within GFF2867 at 291.457 kb on + strand, within GFF2867
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 288,655 + GFF2865 0.44 +0.3 288,655 + GFF2865 0.44 +0.0 288,853 + GFF2865 0.57 +0.9 288,853 + GFF2865 0.57 -1.8 288,853 + GFF2865 0.57 -1.1 288,853 + GFF2865 0.57 +0.5 288,853 + GFF2865 0.57 +0.7 288,853 + GFF2865 0.57 +0.7 288,853 + GFF2865 0.57 -0.4 288,853 + GFF2865 0.57 -0.5 288,854 - GFF2865 0.57 -0.0 288,854 - GFF2865 0.57 -0.1 288,854 - GFF2865 0.57 +0.1 288,854 - GFF2865 0.57 -0.4 288,881 + GFF2865 0.59 +0.4 288,881 + GFF2865 0.59 -0.8 288,881 + GFF2865 0.59 +0.1 288,882 - GFF2865 0.59 -0.5 288,882 - GFF2865 0.59 -0.9 288,882 - GFF2865 0.59 -0.4 289,279 + GFF2865 0.85 +0.4 289,279 + GFF2865 0.85 -2.0 289,279 + GFF2865 0.85 -0.2 289,279 + GFF2865 0.85 +0.4 289,279 + GFF2865 0.85 +0.6 289,279 + GFF2865 0.85 -0.9 289,280 - GFF2865 0.85 +0.2 289,280 - GFF2865 0.85 -0.7 289,280 - GFF2865 0.85 -0.1 289,280 - GFF2865 0.85 -1.4 289,280 - GFF2865 0.85 -1.4 289,333 + GFF2865 0.88 +0.1 289,333 + GFF2865 0.88 +0.1 289,333 + GFF2865 0.88 +0.1 289,333 + GFF2865 0.88 -0.6 289,334 - GFF2865 0.88 -0.3 289,334 - GFF2865 0.88 -0.2 289,334 - GFF2865 0.88 -0.3 289,334 - GFF2865 0.88 -0.9 289,334 - GFF2865 0.88 -1.7 289,334 - GFF2865 0.88 -0.5 289,447 + +0.5 289,447 + -0.3 289,447 + -0.4 289,447 + -1.1 289,448 - +0.1 289,448 - -0.4 289,448 - -0.3 289,499 + +0.3 289,499 + -0.2 289,499 + -0.4 289,499 + -0.6 289,500 - -0.7 289,500 - -1.1 289,500 - +0.3 289,500 - +0.2 289,546 - -0.8 289,546 - +0.3 289,563 + +0.6 289,564 - -0.3 289,564 - -0.1 289,564 - -0.0 289,644 + -1.1 289,644 + -0.5 289,644 + -0.4 289,644 + +1.0 289,644 + -0.7 289,644 + +0.4 289,644 + +1.2 289,644 + +0.5 289,644 + +0.4 289,644 + -0.3 289,645 - +0.5 289,645 - -0.6 289,645 - -2.7 289,645 - -0.1 289,645 - -0.5 289,910 + GFF2866 0.25 -0.1 289,910 + GFF2866 0.25 +1.7 289,911 - GFF2866 0.25 -0.6 289,911 - GFF2866 0.25 -0.3 289,911 - GFF2866 0.25 -0.0 290,681 + +0.4 290,681 + +0.0 290,681 + -0.5 290,682 - -0.2 290,682 - -1.1 290,682 - -1.2 290,682 - +1.7 290,682 - -0.8 290,682 - -0.3 290,965 + GFF2867 0.13 -0.8 290,966 - GFF2867 0.13 -0.6 291,157 + GFF2867 0.27 +0.4 291,157 + GFF2867 0.27 +0.4 291,157 + GFF2867 0.27 -0.9 291,157 + GFF2867 0.27 -0.6 291,217 + GFF2867 0.32 +1.0 291,217 + GFF2867 0.32 -0.4 291,217 + GFF2867 0.32 -1.0 291,217 + GFF2867 0.32 -0.6 291,218 - GFF2867 0.32 -1.1 291,218 - GFF2867 0.32 -2.9 291,218 - GFF2867 0.32 -0.1 291,218 - GFF2867 0.32 +0.0 291,218 - GFF2867 0.32 -1.1 291,218 - GFF2867 0.32 -0.8 291,328 + GFF2867 0.40 +0.2 291,328 + GFF2867 0.40 +0.1 291,328 + GFF2867 0.40 -0.2 291,328 + GFF2867 0.40 -0.3 291,457 + GFF2867 0.49 +1.7 291,457 + GFF2867 0.49 -0.3
Or see this region's nucleotide sequence