Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2654 and GFF2655 overlap by 4 nucleotides GFF2655 and GFF2656 are separated by 155 nucleotides
GFF2654 - Efflux ABC transporter for glutathione/L-cysteine, essential for assembly of bd-type respiratory oxidases => CydC subunit, at 73,777 to 75,492
GFF2654
GFF2655 - Efflux ABC transporter for glutathione/L-cysteine, essential for assembly of bd-type respiratory oxidases => CydD subunit, at 75,489 to 77,177
GFF2655
GFF2656 - Acyltransferase 3, at 77,333 to 78,508
GFF2656
Position (kb) 75
76
77
78 Strain fitness (log2 ratio) -1
0
1 at 74.583 kb on + strand, within GFF2654 at 75.054 kb on - strand, within GFF2654 at 75.054 kb on - strand, within GFF2654 at 75.054 kb on - strand, within GFF2654 at 75.094 kb on + strand, within GFF2654 at 75.094 kb on + strand, within GFF2654 at 75.221 kb on + strand, within GFF2654 at 75.378 kb on + strand at 75.378 kb on + strand at 75.378 kb on + strand at 75.379 kb on - strand at 75.379 kb on - strand at 76.281 kb on + strand, within GFF2655 at 76.402 kb on + strand, within GFF2655 at 76.402 kb on + strand, within GFF2655 at 76.402 kb on + strand, within GFF2655 at 76.402 kb on + strand, within GFF2655 at 76.402 kb on + strand, within GFF2655 at 76.402 kb on + strand, within GFF2655 at 76.402 kb on + strand, within GFF2655 at 76.403 kb on - strand, within GFF2655 at 76.403 kb on - strand, within GFF2655 at 76.403 kb on - strand, within GFF2655 at 76.403 kb on - strand, within GFF2655 at 76.403 kb on - strand, within GFF2655 at 76.403 kb on - strand, within GFF2655 at 76.403 kb on - strand, within GFF2655 at 76.403 kb on - strand, within GFF2655 at 76.724 kb on - strand, within GFF2655 at 76.724 kb on - strand, within GFF2655 at 77.348 kb on + strand at 77.349 kb on - strand at 77.349 kb on - strand at 77.425 kb on - strand at 77.565 kb on + strand, within GFF2656 at 77.805 kb on + strand, within GFF2656 at 77.805 kb on + strand, within GFF2656 at 77.806 kb on - strand, within GFF2656 at 77.806 kb on - strand, within GFF2656 at 77.806 kb on - strand, within GFF2656 at 77.821 kb on - strand, within GFF2656 at 78.015 kb on + strand, within GFF2656 at 78.016 kb on - strand, within GFF2656 at 78.042 kb on + strand, within GFF2656 at 78.043 kb on - strand, within GFF2656 at 78.094 kb on + strand, within GFF2656 at 78.094 kb on + strand, within GFF2656 at 78.094 kb on + strand, within GFF2656 at 78.094 kb on + strand, within GFF2656 at 78.094 kb on + strand, within GFF2656 at 78.094 kb on + strand, within GFF2656 at 78.095 kb on - strand, within GFF2656 at 78.095 kb on - strand, within GFF2656 at 78.095 kb on - strand, within GFF2656 at 78.095 kb on - strand, within GFF2656 at 78.095 kb on - strand, within GFF2656
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 74,583 + GFF2654 0.47 -0.1 75,054 - GFF2654 0.74 +0.3 75,054 - GFF2654 0.74 -0.5 75,054 - GFF2654 0.74 -0.0 75,094 + GFF2654 0.77 +0.3 75,094 + GFF2654 0.77 +1.1 75,221 + GFF2654 0.84 +0.2 75,378 + -0.6 75,378 + +0.3 75,378 + -1.1 75,379 - +0.5 75,379 - -0.7 76,281 + GFF2655 0.47 -1.3 76,402 + GFF2655 0.54 -1.1 76,402 + GFF2655 0.54 -0.9 76,402 + GFF2655 0.54 -0.1 76,402 + GFF2655 0.54 -0.1 76,402 + GFF2655 0.54 -0.6 76,402 + GFF2655 0.54 +0.0 76,402 + GFF2655 0.54 -0.6 76,403 - GFF2655 0.54 -0.7 76,403 - GFF2655 0.54 +0.3 76,403 - GFF2655 0.54 +0.6 76,403 - GFF2655 0.54 -0.5 76,403 - GFF2655 0.54 -0.9 76,403 - GFF2655 0.54 -0.7 76,403 - GFF2655 0.54 -0.3 76,403 - GFF2655 0.54 -1.6 76,724 - GFF2655 0.73 -0.8 76,724 - GFF2655 0.73 -0.5 77,348 + +0.1 77,349 - -0.3 77,349 - -0.6 77,425 - -0.0 77,565 + GFF2656 0.20 +1.7 77,805 + GFF2656 0.40 +1.3 77,805 + GFF2656 0.40 -0.4 77,806 - GFF2656 0.40 -0.2 77,806 - GFF2656 0.40 -1.0 77,806 - GFF2656 0.40 -0.1 77,821 - GFF2656 0.41 -0.3 78,015 + GFF2656 0.58 +0.2 78,016 - GFF2656 0.58 -0.3 78,042 + GFF2656 0.60 -0.8 78,043 - GFF2656 0.60 +0.1 78,094 + GFF2656 0.65 -0.2 78,094 + GFF2656 0.65 +0.1 78,094 + GFF2656 0.65 -0.1 78,094 + GFF2656 0.65 +0.1 78,094 + GFF2656 0.65 -0.1 78,094 + GFF2656 0.65 +0.5 78,095 - GFF2656 0.65 -0.3 78,095 - GFF2656 0.65 +0.5 78,095 - GFF2656 0.65 -0.9 78,095 - GFF2656 0.65 -1.4 78,095 - GFF2656 0.65 -0.6
Or see this region's nucleotide sequence