Strain Fitness in Variovorax sp. SCN45 around GFF2454

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2453 and GFF2454 are separated by 266 nucleotidesGFF2454 and GFF2455 overlap by 4 nucleotides GFF2453 - NAD-dependent dihydropyrimidine dehydrogenase subunit PreT (EC 1.3.1.1), at 509,688 to 511,058 GFF2453 GFF2454 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 511,325 to 512,776 GFF2454 GFF2455 - Transcriptional regulator RutR of pyrimidine catabolism (TetR family), at 512,773 to 513,465 GFF2455 Position (kb) 511 512 513Strain fitness (log2 ratio) -2 -1 0 1at 510.346 kb on + strand, within GFF2453at 510.346 kb on + strand, within GFF2453at 510.469 kb on + strand, within GFF2453at 510.470 kb on - strand, within GFF2453at 510.895 kb on + strand, within GFF2453at 510.895 kb on + strand, within GFF2453at 510.901 kb on + strand, within GFF2453at 510.901 kb on + strand, within GFF2453at 510.901 kb on + strand, within GFF2453at 510.901 kb on + strand, within GFF2453at 510.902 kb on - strand, within GFF2453at 510.902 kb on - strand, within GFF2453at 510.902 kb on - strand, within GFF2453at 510.902 kb on - strand, within GFF2453at 510.904 kb on + strand, within GFF2453at 510.904 kb on + strand, within GFF2453at 510.905 kb on - strand, within GFF2453at 510.905 kb on - strand, within GFF2453at 511.179 kb on + strandat 511.179 kb on + strandat 511.179 kb on + strandat 511.179 kb on + strandat 511.179 kb on + strandat 511.179 kb on + strandat 511.179 kb on + strandat 511.180 kb on - strandat 511.180 kb on - strandat 511.568 kb on + strand, within GFF2454at 511.568 kb on + strand, within GFF2454at 511.569 kb on - strand, within GFF2454at 511.569 kb on - strand, within GFF2454at 511.619 kb on + strand, within GFF2454at 511.619 kb on + strand, within GFF2454at 511.619 kb on + strand, within GFF2454at 511.619 kb on + strand, within GFF2454at 511.620 kb on - strand, within GFF2454at 511.620 kb on - strand, within GFF2454at 511.622 kb on + strand, within GFF2454at 511.622 kb on + strand, within GFF2454at 511.622 kb on + strand, within GFF2454at 511.622 kb on + strand, within GFF2454at 511.622 kb on + strand, within GFF2454at 511.622 kb on + strand, within GFF2454at 511.622 kb on + strand, within GFF2454at 511.622 kb on + strand, within GFF2454at 511.623 kb on - strand, within GFF2454at 511.623 kb on - strand, within GFF2454at 511.623 kb on - strand, within GFF2454at 511.623 kb on - strand, within GFF2454at 511.623 kb on - strand, within GFF2454at 511.623 kb on - strand, within GFF2454at 512.705 kb on + strandat 512.705 kb on + strandat 512.938 kb on + strand, within GFF2455at 512.938 kb on + strand, within GFF2455at 512.938 kb on + strand, within GFF2455at 512.939 kb on - strand, within GFF2455at 512.939 kb on - strand, within GFF2455at 512.939 kb on - strand, within GFF2455at 512.939 kb on - strand, within GFF2455at 512.941 kb on + strand, within GFF2455at 512.942 kb on - strand, within GFF2455at 512.942 kb on - strand, within GFF2455at 512.942 kb on - strand, within GFF2455at 512.942 kb on - strand, within GFF2455at 512.942 kb on - strand, within GFF2455at 513.061 kb on + strand, within GFF2455at 513.062 kb on - strand, within GFF2455at 513.062 kb on - strand, within GFF2455at 513.062 kb on - strand, within GFF2455at 513.062 kb on - strand, within GFF2455at 513.089 kb on - strand, within GFF2455at 513.089 kb on - strand, within GFF2455at 513.578 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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510,346 + GFF2453 0.48 -0.7
510,346 + GFF2453 0.48 -0.1
510,469 + GFF2453 0.57 +0.5
510,470 - GFF2453 0.57 -0.6
510,895 + GFF2453 0.88 +1.2
510,895 + GFF2453 0.88 -1.4
510,901 + GFF2453 0.88 +0.7
510,901 + GFF2453 0.88 +0.2
510,901 + GFF2453 0.88 +0.8
510,901 + GFF2453 0.88 -0.2
510,902 - GFF2453 0.89 +0.4
510,902 - GFF2453 0.89 +0.6
510,902 - GFF2453 0.89 -0.2
510,902 - GFF2453 0.89 -0.2
510,904 + GFF2453 0.89 -0.8
510,904 + GFF2453 0.89 +0.8
510,905 - GFF2453 0.89 +1.1
510,905 - GFF2453 0.89 -0.5
511,179 + -0.2
511,179 + -0.4
511,179 + -0.1
511,179 + +0.3
511,179 + -2.7
511,179 + -0.1
511,179 + +0.5
511,180 - +1.1
511,180 - -0.2
511,568 + GFF2454 0.17 -0.7
511,568 + GFF2454 0.17 -0.1
511,569 - GFF2454 0.17 -0.2
511,569 - GFF2454 0.17 +0.2
511,619 + GFF2454 0.20 +0.2
511,619 + GFF2454 0.20 +0.2
511,619 + GFF2454 0.20 +0.4
511,619 + GFF2454 0.20 -0.6
511,620 - GFF2454 0.20 -1.3
511,620 - GFF2454 0.20 +0.4
511,622 + GFF2454 0.20 +1.3
511,622 + GFF2454 0.20 +0.7
511,622 + GFF2454 0.20 -0.3
511,622 + GFF2454 0.20 +0.0
511,622 + GFF2454 0.20 -0.3
511,622 + GFF2454 0.20 -0.0
511,622 + GFF2454 0.20 +0.0
511,622 + GFF2454 0.20 -1.0
511,623 - GFF2454 0.21 +0.5
511,623 - GFF2454 0.21 -0.2
511,623 - GFF2454 0.21 -0.2
511,623 - GFF2454 0.21 +0.7
511,623 - GFF2454 0.21 -1.1
511,623 - GFF2454 0.21 +0.2
512,705 + -0.2
512,705 + -0.2
512,938 + GFF2455 0.24 +0.1
512,938 + GFF2455 0.24 -1.0
512,938 + GFF2455 0.24 +0.2
512,939 - GFF2455 0.24 +0.4
512,939 - GFF2455 0.24 -0.1
512,939 - GFF2455 0.24 -0.3
512,939 - GFF2455 0.24 -0.4
512,941 + GFF2455 0.24 +0.3
512,942 - GFF2455 0.24 +0.6
512,942 - GFF2455 0.24 -0.7
512,942 - GFF2455 0.24 +0.1
512,942 - GFF2455 0.24 -0.8
512,942 - GFF2455 0.24 -0.1
513,061 + GFF2455 0.42 +0.3
513,062 - GFF2455 0.42 -0.7
513,062 - GFF2455 0.42 -0.8
513,062 - GFF2455 0.42 +0.6
513,062 - GFF2455 0.42 -0.2
513,089 - GFF2455 0.46 +0.2
513,089 - GFF2455 0.46 -0.7
513,578 - -0.4

Or see this region's nucleotide sequence