Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2388 and GFF2389 are separated by 333 nucleotides GFF2389 and GFF2390 are separated by 66 nucleotides GFF2390 and GFF2391 are separated by 19 nucleotides GFF2391 and GFF2392 overlap by 4 nucleotides
GFF2388 - hypothetical protein, at 440,283 to 440,759
GFF2388
GFF2389 - hypothetical protein, at 441,093 to 441,320
GFF2389
GFF2390 - no description, at 441,387 to 441,695
GFF2390
GFF2391 - KEGG: periplasmic protein TonB, at 441,715 to 442,368
GFF2391
GFF2392 - Biopolymer transport protein ExbD/TolR, at 442,365 to 442,799
GFF2392
Position (kb) 441
442 Strain fitness (log2 ratio) -2
-1
0
1
2 at 440.495 kb on - strand, within GFF2388 at 440.659 kb on + strand, within GFF2388 at 440.659 kb on + strand, within GFF2388 at 440.660 kb on - strand, within GFF2388 at 440.898 kb on + strand at 441.183 kb on + strand, within GFF2389 at 441.207 kb on + strand, within GFF2389 at 441.208 kb on - strand, within GFF2389 at 441.222 kb on + strand, within GFF2389 at 441.222 kb on + strand, within GFF2389 at 441.222 kb on + strand, within GFF2389 at 441.223 kb on - strand, within GFF2389 at 441.223 kb on - strand, within GFF2389 at 441.223 kb on - strand, within GFF2389 at 441.223 kb on - strand, within GFF2389 at 441.223 kb on - strand, within GFF2389 at 441.386 kb on + strand at 441.386 kb on + strand at 441.564 kb on + strand, within GFF2390 at 441.565 kb on - strand, within GFF2390 at 441.588 kb on + strand, within GFF2390 at 441.588 kb on + strand, within GFF2390 at 441.588 kb on + strand, within GFF2390 at 441.589 kb on - strand, within GFF2390 at 441.603 kb on + strand, within GFF2390 at 441.604 kb on - strand, within GFF2390 at 441.782 kb on + strand, within GFF2391 at 441.871 kb on + strand, within GFF2391 at 441.871 kb on + strand, within GFF2391 at 441.871 kb on + strand, within GFF2391 at 441.872 kb on - strand, within GFF2391 at 442.106 kb on + strand, within GFF2391 at 442.106 kb on + strand, within GFF2391 at 442.106 kb on + strand, within GFF2391 at 442.106 kb on + strand, within GFF2391 at 442.106 kb on + strand, within GFF2391 at 442.272 kb on + strand, within GFF2391 at 442.273 kb on - strand, within GFF2391
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 440,495 - GFF2388 0.44 +0.4 440,659 + GFF2388 0.79 -1.6 440,659 + GFF2388 0.79 -0.1 440,660 - GFF2388 0.79 -0.7 440,898 + +0.4 441,183 + GFF2389 0.39 +0.4 441,207 + GFF2389 0.50 +0.2 441,208 - GFF2389 0.50 -0.2 441,222 + GFF2389 0.57 -0.5 441,222 + GFF2389 0.57 -2.1 441,222 + GFF2389 0.57 -0.6 441,223 - GFF2389 0.57 -0.5 441,223 - GFF2389 0.57 +1.6 441,223 - GFF2389 0.57 +0.0 441,223 - GFF2389 0.57 +0.2 441,223 - GFF2389 0.57 +2.2 441,386 + +0.7 441,386 + +1.4 441,564 + GFF2390 0.57 -0.3 441,565 - GFF2390 0.58 -0.6 441,588 + GFF2390 0.65 -0.5 441,588 + GFF2390 0.65 -0.4 441,588 + GFF2390 0.65 +0.0 441,589 - GFF2390 0.65 -0.7 441,603 + GFF2390 0.70 -1.3 441,604 - GFF2390 0.70 -0.3 441,782 + GFF2391 0.10 -0.1 441,871 + GFF2391 0.24 +0.5 441,871 + GFF2391 0.24 -0.5 441,871 + GFF2391 0.24 -1.3 441,872 - GFF2391 0.24 +0.9 442,106 + GFF2391 0.60 +0.6 442,106 + GFF2391 0.60 -0.1 442,106 + GFF2391 0.60 +0.7 442,106 + GFF2391 0.60 -0.8 442,106 + GFF2391 0.60 -1.3 442,272 + GFF2391 0.85 -0.8 442,273 - GFF2391 0.85 -0.7
Or see this region's nucleotide sequence