Strain Fitness in Variovorax sp. SCN45 around GFF2359

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2357 and GFF2358 are separated by 1 nucleotidesGFF2358 and GFF2359 are separated by 31 nucleotidesGFF2359 and GFF2360 are separated by 141 nucleotides GFF2357 - DNA repair protein RecN, at 408,344 to 410,026 GFF2357 GFF2358 - NAD kinase (EC 2.7.1.23), at 410,028 to 410,939 GFF2358 GFF2359 - Heat-inducible transcription repressor HrcA, at 410,971 to 411,978 GFF2359 GFF2360 - GGDEF domain protein, at 412,120 to 413,979 GFF2360 Position (kb) 410 411 412Strain fitness (log2 ratio) -2 -1 0 1 2at 410.939 kb on + strandat 410.939 kb on + strandat 410.939 kb on + strandat 410.939 kb on + strandat 410.940 kb on - strandat 410.940 kb on - strandat 410.940 kb on - strandat 410.940 kb on - strandat 410.940 kb on - strandat 410.940 kb on - strandat 410.940 kb on - strandat 410.940 kb on - strandat 410.951 kb on + strandat 410.952 kb on - strandat 410.952 kb on - strandat 410.952 kb on - strandat 410.959 kb on + strandat 410.959 kb on + strandat 410.959 kb on + strandat 410.960 kb on - strandat 410.960 kb on - strandat 411.019 kb on + strandat 411.019 kb on + strandat 411.019 kb on + strandat 411.019 kb on + strandat 411.020 kb on - strandat 411.020 kb on - strandat 411.020 kb on - strandat 411.162 kb on + strand, within GFF2359at 411.162 kb on + strand, within GFF2359at 411.162 kb on + strand, within GFF2359at 411.163 kb on - strand, within GFF2359at 411.163 kb on - strand, within GFF2359at 411.163 kb on - strand, within GFF2359at 411.163 kb on - strand, within GFF2359at 411.452 kb on - strand, within GFF2359at 411.452 kb on - strand, within GFF2359at 411.484 kb on + strand, within GFF2359at 411.484 kb on + strand, within GFF2359at 411.484 kb on + strand, within GFF2359at 411.484 kb on + strand, within GFF2359at 411.484 kb on + strand, within GFF2359at 411.485 kb on - strand, within GFF2359at 411.485 kb on - strand, within GFF2359at 411.485 kb on - strand, within GFF2359at 411.485 kb on - strand, within GFF2359at 411.485 kb on - strand, within GFF2359at 411.485 kb on - strand, within GFF2359at 411.499 kb on + strand, within GFF2359at 411.500 kb on - strand, within GFF2359at 411.500 kb on - strand, within GFF2359at 411.500 kb on - strand, within GFF2359at 411.500 kb on - strand, within GFF2359at 411.847 kb on + strand, within GFF2359at 411.847 kb on + strand, within GFF2359at 411.847 kb on + strand, within GFF2359at 411.847 kb on + strand, within GFF2359at 411.847 kb on + strand, within GFF2359at 411.848 kb on - strand, within GFF2359at 411.848 kb on - strand, within GFF2359at 411.848 kb on - strand, within GFF2359at 411.848 kb on - strand, within GFF2359at 411.908 kb on - strandat 411.977 kb on - strandat 411.977 kb on - strandat 411.995 kb on + strandat 411.995 kb on + strandat 411.995 kb on + strandat 411.995 kb on + strandat 412.101 kb on - strandat 412.101 kb on - strandat 412.238 kb on + strandat 412.238 kb on + strandat 412.238 kb on + strandat 412.238 kb on + strandat 412.238 kb on + strandat 412.238 kb on + strandat 412.239 kb on - strandat 412.239 kb on - strandat 412.239 kb on - strandat 412.239 kb on - strandat 412.239 kb on - strandat 412.239 kb on - strandat 412.239 kb on - strandat 412.239 kb on - strandat 412.239 kb on - strandat 412.239 kb on - strandat 412.239 kb on - strandat 412.239 kb on - strandat 412.886 kb on + strand, within GFF2360at 412.886 kb on + strand, within GFF2360at 412.887 kb on - strand, within GFF2360at 412.904 kb on + strand, within GFF2360at 412.905 kb on - strand, within GFF2360at 412.905 kb on - strand, within GFF2360at 412.905 kb on - strand, within GFF2360

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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410,939 + +0.5
410,939 + -0.4
410,939 + -0.6
410,939 + -0.6
410,940 - -0.3
410,940 - +0.8
410,940 - +0.8
410,940 - +0.8
410,940 - +1.0
410,940 - +0.2
410,940 - +0.2
410,940 - -0.2
410,951 + +0.1
410,952 - -0.7
410,952 - +0.8
410,952 - +0.1
410,959 + -1.0
410,959 + -0.6
410,959 + -1.0
410,960 - +0.2
410,960 - -0.4
411,019 + +0.0
411,019 + +0.6
411,019 + +1.8
411,019 + -0.1
411,020 - -1.4
411,020 - -0.0
411,020 - -0.2
411,162 + GFF2359 0.19 -1.7
411,162 + GFF2359 0.19 -1.6
411,162 + GFF2359 0.19 -0.1
411,163 - GFF2359 0.19 +0.1
411,163 - GFF2359 0.19 -0.0
411,163 - GFF2359 0.19 -0.2
411,163 - GFF2359 0.19 +1.3
411,452 - GFF2359 0.48 +2.1
411,452 - GFF2359 0.48 -1.2
411,484 + GFF2359 0.51 +0.4
411,484 + GFF2359 0.51 +0.5
411,484 + GFF2359 0.51 -0.9
411,484 + GFF2359 0.51 +0.4
411,484 + GFF2359 0.51 +0.1
411,485 - GFF2359 0.51 +0.3
411,485 - GFF2359 0.51 +0.8
411,485 - GFF2359 0.51 +0.2
411,485 - GFF2359 0.51 +0.0
411,485 - GFF2359 0.51 -0.1
411,485 - GFF2359 0.51 +0.4
411,499 + GFF2359 0.52 -1.9
411,500 - GFF2359 0.52 -0.7
411,500 - GFF2359 0.52 +0.3
411,500 - GFF2359 0.52 -0.8
411,500 - GFF2359 0.52 +1.0
411,847 + GFF2359 0.87 -0.3
411,847 + GFF2359 0.87 +0.2
411,847 + GFF2359 0.87 -0.7
411,847 + GFF2359 0.87 -0.0
411,847 + GFF2359 0.87 +0.3
411,848 - GFF2359 0.87 -0.8
411,848 - GFF2359 0.87 +0.2
411,848 - GFF2359 0.87 -1.1
411,848 - GFF2359 0.87 -0.2
411,908 - -0.7
411,977 - -0.0
411,977 - -0.0
411,995 + +0.3
411,995 + +0.0
411,995 + +0.7
411,995 + -0.7
412,101 - +0.8
412,101 - -0.3
412,238 + +0.2
412,238 + +0.6
412,238 + +0.2
412,238 + -0.1
412,238 + -0.2
412,238 + -0.4
412,239 - -0.3
412,239 - +0.1
412,239 - -0.0
412,239 - -0.8
412,239 - -0.8
412,239 - +0.2
412,239 - -0.6
412,239 - -0.9
412,239 - +1.1
412,239 - -0.4
412,239 - -1.2
412,239 - +0.9
412,886 + GFF2360 0.41 +0.9
412,886 + GFF2360 0.41 +0.3
412,887 - GFF2360 0.41 +0.6
412,904 + GFF2360 0.42 +0.2
412,905 - GFF2360 0.42 +1.0
412,905 - GFF2360 0.42 -0.5
412,905 - GFF2360 0.42 -1.0

Or see this region's nucleotide sequence